Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E21
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    50   1e-07
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    28   0.72 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.1  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   6.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   8.9  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    24   8.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   8.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    24   8.9  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +1

Query: 40  SSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAAD 219
           SS +  +    R   S L L EH    LSPA+ +A+ AAK+ GG++   V+G      + 
Sbjct: 14  SSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQ 73

Query: 220 KIAKA-NGVAKVLVAESDAFKGFTAESITPLILATQKQ 330
           K+AK+ N + KV+  E+ +++    + I  ++    K+
Sbjct: 74  KVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKK 111



 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 341 THILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
           +H+ +  +  GK ++PR+AA  DV  I+DIIGV
Sbjct: 115 SHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGV 147


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 427 ISDR*HIKFGSHPRQNSLAKSSSGSQDMG 341
           ISDR H+ F  H R ++L ++  G Q +G
Sbjct: 112 ISDRAHLVFDYHQRADALNEAELGKQSIG 140


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 369  KAVAGAKIWVKLKL--LLCSQY*RCY 298
            K VA A  W+ L L   LC  Y RCY
Sbjct: 1336 KPVANAPFWICLILNVALCIMYLRCY 1361


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 PHFVPTTSTDISPPIFLAAVS 144
           P F+P     ++PP+  AAVS
Sbjct: 132 PVFIPQVGMSVAPPVATAAVS 152


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 220 KIAKANGVAKVLVAESDAFKGFTAESITPLILATQKQL 333
           K+   NG+  + V      K FTA+ I+ ++L   K++
Sbjct: 95  KVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEI 132


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 67   QLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEIS 180
            +L  ++S   L++HN ++ SPA Q +   A  + G I+
Sbjct: 1175 KLDLIKSKSFLSDHNIQLSSPAAQESAKLAFSLHGWIN 1212


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 190 LQAQISHRQFS*QRSVHFGWLVTIPHYYVL 101
           L+AQ+ H++ + + +   G+L+ I  YY+L
Sbjct: 25  LEAQVEHKKRNERGNAFVGFLILIFVYYLL 54


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 182 TDISPPIFLAAVSAFWVAGDNTSLLCSAKTNV 87
           T   P +FLA    F   G+    LCS K +V
Sbjct: 395 TPTYPELFLAKAKIFLCMGEIEEALCSFKRSV 426


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 270 CFQGFYS*EHNTSNIGYTEAT 332
           CFQG Y+ + +T  I Y   T
Sbjct: 239 CFQGLYALKPSTGRISYLNVT 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,921
Number of Sequences: 5004
Number of extensions: 29057
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)