Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E21
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875...    48   2e-06
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623...    37   0.008
02_05_0160 - 26382377-26382874                                         29   2.2  
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895...    27   5.0  
01_05_0421 + 21990034-21990392,21991691-21992681                       27   6.6  
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54...    27   8.7  

>03_06_0581 +
           34886728-34886817,34886990-34887175,34887332-34887543,
           34888161-34888318,34888615-34888773,34888921-34888973,
           34889265-34889405,34889788-34889823,34890542-34890776,
           34891017-34891144
          Length = 465

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 18/34 (52%), Positives = 28/34 (82%)
 Frame = +2

Query: 338 FTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
           ++H++A +T+FGK +LPR AA LDVSP+TD+  +
Sbjct: 122 YSHVIASSTSFGKNLLPRAAALLDVSPVTDVTSI 155



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
 Frame = +1

Query: 70  LRRLQSTLVLAEHNNEVLSPATQNALTAAKKIG---GEISVLVVGTKCG--PAADKIAKA 234
           L R  STLV+AEH    + P++ +AL AA+ IG     +S+L+ G+  G   AA+  A +
Sbjct: 27  LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86

Query: 235 NG-VAKVLVAESDAFKGFTAESITPLILATQ 324
           +  V++VLVA+SD F    AE    L+ + Q
Sbjct: 87  HPLVSEVLVADSDVFAHPLAEPWAELLRSVQ 117


>03_02_0993 -
           13058785-13059025,13059188-13059264,13062157-13062351,
           13062650-13062811,13062915-13063044,13063082-13063149,
           13063244-13063291,13063383-13063448,13063739-13063818,
           13064644-13064737
          Length = 386

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 100 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 213
           + +NN +L PA  NA+  A+K+ G+IS++V G   G A
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGA 206


>02_05_0160 - 26382377-26382874
          Length = 165

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 203 HFVPTTSTDISPPIFLAAVSAFWVAGDNTSLLCSAKTNVLCKRRSC 66
           H   ++ST I+PP   AAVS   +  DN    CSA T++  +   C
Sbjct: 40  HGAWSSSTMITPPPRGAAVSKLGILSDN-GAFCSAPTHLSSQSHRC 84


>07_03_1621 +
           28187846-28187915,28189214-28189293,28189485-28189550,
           28189801-28189848,28189967-28190034,28190107-28190179,
           28190284-28190445,28190620-28190814,28191114-28191190,
           28191280-28191481
          Length = 346

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 100 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 213
           + +NN +L  A  +A+  A++  G+I+V+V G   G A
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGA 179


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 133 WLVTIP--HYYVLLRPTCFVNAAA 68
           W  T+P  H++ LL+P C  NAAA
Sbjct: 227 WPTTMPYDHHHPLLQPLCNANAAA 250


>01_01_0071 +
           548255-548399,548478-548651,548787-548892,548992-549130,
           549216-549293,549395-549460,550061-550201,550417-550527,
           550614-550655,550739-550825,551033-551118,551681-551684
          Length = 392

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 438 TPIISVIGDTSSLAAT-LGKIALPKAVAGAKI 346
           TPI +++G  SSL AT LG +A+  A+  A +
Sbjct: 25  TPIGALLGSLSSLPATKLGSVAIQAALRRANV 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,234,584
Number of Sequences: 37544
Number of extensions: 196463
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)