Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E21
(439 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04058-1|AAA52406.1| 333|Homo sapiens ETFA protein. 110 2e-24
BT009796-1|AAP88798.1| 333|Homo sapiens electron-transfer-flavo... 110 2e-24
BC095457-1|AAH95457.1| 333|Homo sapiens electron-transfer-flavo... 110 2e-24
BC015526-1|AAH15526.1| 333|Homo sapiens electron-transfer-flavo... 110 2e-24
AF436657-1|AAN03712.1| 333|Homo sapiens electron transfer flavo... 110 2e-24
U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymera... 29 7.0
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 29 7.0
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 29 7.0
BC073968-1|AAH73968.1| 1032|Homo sapiens POLR1A protein protein. 29 7.0
>J04058-1|AAA52406.1| 333|Homo sapiens ETFA protein.
Length = 333
Score = 110 bits (264), Expect = 2e-24
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 64 AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 243
A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC A + K G+
Sbjct: 14 ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73
Query: 244 AKVLVAESDAFKGFTAESITPLILATQKQ 330
AKVLVA+ D +KG E +TPLILATQKQ
Sbjct: 74 AKVLVAQHDVYKGLLPEELTPLILATQKQ 102
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
+ FN+THI A A+AFGK +LPRVAAKL+V+PI+DII +
Sbjct: 100 QKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAI 138
>BT009796-1|AAP88798.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 110 bits (264), Expect = 2e-24
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 64 AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 243
A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC A + K G+
Sbjct: 14 ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73
Query: 244 AKVLVAESDAFKGFTAESITPLILATQKQ 330
AKVLVA+ D +KG E +TPLILATQKQ
Sbjct: 74 AKVLVAQHDVYKGLLPEELTPLILATQKQ 102
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
+ FN+THI A A+AFGK +LPRVAAKL+V+PI+DII +
Sbjct: 100 QKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAI 138
>BC095457-1|AAH95457.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 110 bits (264), Expect = 2e-24
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 64 AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 243
A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC A + K G+
Sbjct: 14 ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73
Query: 244 AKVLVAESDAFKGFTAESITPLILATQKQ 330
AKVLVA+ D +KG E +TPLILATQKQ
Sbjct: 74 AKVLVAQHDVYKGLLPEELTPLILATQKQ 102
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
+ FN+THI A A+AFGK +LPRVAAKL+V+PI+DII +
Sbjct: 100 QKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAI 138
>BC015526-1|AAH15526.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 110 bits (264), Expect = 2e-24
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 64 AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 243
A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC A + K G+
Sbjct: 14 ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73
Query: 244 AKVLVAESDAFKGFTAESITPLILATQKQ 330
AKVLVA+ D +KG E +TPLILATQKQ
Sbjct: 74 AKVLVAQHDVYKGLLPEELTPLILATQKQ 102
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
+ FN+THI A A+AFGK +LPRVAAKL+V+PI+DII +
Sbjct: 100 QKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAI 138
>AF436657-1|AAN03712.1| 333|Homo sapiens electron transfer
flavoprotein alpha-subunit protein.
Length = 333
Score = 110 bits (264), Expect = 2e-24
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 64 AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 243
A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC A + K G+
Sbjct: 14 ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73
Query: 244 AKVLVAESDAFKGFTAESITPLILATQKQ 330
AKVLVA+ D +KG E +TPLILATQKQ
Sbjct: 74 AKVLVAQHDVYKGLLPEELTPLILATQKQ 102
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
+ FN+THI A A+AFGK +LPRVAAKL+V+PI+DII +
Sbjct: 100 QKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAI 138
>U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymerase
I, largest subunit protein.
Length = 1717
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 420 IGDTSSLAATLGKIALPKAVAGAKIWVKLKLLLCSQY*RCYALSC 286
+ D S+ + LG I LP V ++ KL LLL C+ L+C
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTC 112
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 420 IGDTSSLAATLGKIALPKAVAGAKIWVKLKLLLCSQY*RCYALSC 286
+ D S+ + LG I LP V ++ KL LLL C+ L+C
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTC 112
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 420 IGDTSSLAATLGKIALPKAVAGAKIWVKLKLLLCSQY*RCYALSC 286
+ D S+ + LG I LP V ++ KL LLL C+ L+C
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTC 112
>BC073968-1|AAH73968.1| 1032|Homo sapiens POLR1A protein protein.
Length = 1032
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 420 IGDTSSLAATLGKIALPKAVAGAKIWVKLKLLLCSQY*RCYALSC 286
+ D S+ + LG I LP V ++ KL LLL C+ L+C
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTC 112
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,416,238
Number of Sequences: 237096
Number of extensions: 1051035
Number of successful extensions: 1999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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