Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E21
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...    95   2e-20
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...    95   2e-20
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    27   6.0  
Z81500-9|CAB04098.2|  141|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U40797-5|AAB37548.1|  402|Caenorhabditis elegans Saposin-like pr...    27   7.9  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 48/107 (44%), Positives = 65/107 (60%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L +   RL STLV+AEH+   L+P T NA+TAA K+G E+SVLV G      A+++AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQKQL*FYPYLGSRYCFWQG 378
           GV +VLVA+ +  K    E + P+ILA+QKQ  F         F +G
Sbjct: 73  GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRG 119



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
           +  FNFT I A ++AFG+ ++PRVAAKLDVS I+D+  V
Sbjct: 101 QKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEV 139


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 48/107 (44%), Positives = 65/107 (60%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L +   RL STLV+AEH+   L+P T NA+TAA K+G E+SVLV G      A+++AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQKQL*FYPYLGSRYCFWQG 378
           GV +VLVA+ +  K    E + P+ILA+QKQ  F         F +G
Sbjct: 73  GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRG 119



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
           +  FNFT I A ++AFG+ ++PRVAAKLDVS I+D+  V
Sbjct: 101 QKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEV 139


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 337 FYPYLGSRYCFWQGYF 384
           F+PY   R+ +W GYF
Sbjct: 347 FFPYASGRHSYWTGYF 362


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 5   LGKKNIEICFHQAVGIYF*LHSCGVYKARWS*QNIIMRYCHQPPK 139
           LG    ++CF    GI+F  ++C    A +   +I  + CH  P+
Sbjct: 9   LGAIKCQVCFLPGHGIHFGAYTCRACAAFFRIVSISKKKCHFSPR 53


>Z81500-9|CAB04098.2|  141|Caenorhabditis elegans Hypothetical
           protein F11D11.6 protein.
          Length = 141

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 134 VAGDNTSLLCSAKTNVLCKRRSCAVKNRCLLLGENIFQCFFF 9
           VA    + L + KT   CK   C VKN C L    I +C FF
Sbjct: 35  VASQGANDLTAFKTVGECKN-GCFVKNDCFLALFVIDKCIFF 75


>U40797-5|AAB37548.1|  402|Caenorhabditis elegans Saposin-like
           protein family protein8 protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 222 LVCSWTTFCTDYKHRYL-TANFLSSGQ 145
           +V +WT  C D+ H Y+ T  FL+  Q
Sbjct: 273 MVANWTDGCNDFVHMYMSTVLFLTYNQ 299


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 40  SSRHLFLTAQLRRLQSTLVLAEHNNEVLSPA 132
           SS+ LF      ++ STL++ E+ NE+LSP+
Sbjct: 122 SSQDLFSKFIFFQIDSTLIVFENFNELLSPS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,491,593
Number of Sequences: 27780
Number of extensions: 170983
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)