Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E21
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...    53   1e-07
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    31   0.45 
At1g54820.1 68414.m06249 protein kinase family protein contains ...    29   1.4  
At3g52250.1 68416.m05742 myb family transcription factor contain...    28   3.2  
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    27   4.2  
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    27   5.5  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   7.3  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    26   9.7  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +2

Query: 323 RSNFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGV 439
           R   +++HILA +++FGK ILPRVAA LDVSPITD++ +
Sbjct: 120 RQQGDYSHILASSSSFGKNILPRVAALLDVSPITDVVKI 158



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
 Frame = +1

Query: 34  SPSSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIG--GEISVLVV--GTK 201
           +P S  + +T+ L R  STL+LAEH +  + P T + + AA  +G    IS+L+   G+ 
Sbjct: 20  APRSISISITS-LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSISLLLAGSGSS 78

Query: 202 CGPAADKIAKAN-GVAKVLVAESDAFKGFTAESITPLILATQKQ 330
              AA + A  +  V++VLVA+SD F+   AE    L+   ++Q
Sbjct: 79  LQEAASQAASCHPSVSEVLVADSDKFEYSLAEPWAKLVDFVRQQ 122


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 27/90 (30%), Positives = 44/90 (48%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L+ QLR L++ L  +EH    LS     +L AA++    +S     TK    +D++ +  
Sbjct: 659 LSTQLRGLEAQLESSEHRVLELS----ESLKAAEEESRTMS-----TKISETSDELERTQ 709

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQK 327
            + + L A+S   K   AE  + L L T+K
Sbjct: 710 IMVQELTADSSKLKEQLAEKESKLFLLTEK 739


>At1g54820.1 68414.m06249 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 73  RRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGT 198
           R  + T +L + NN         A T + K+ GEIS  V+GT
Sbjct: 280 RNFKCTNILLDQNNRAKVSDFGLAKTGSDKLNGEISTRVIGT 321


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 429  ISVIGDTSSLAATLGKIALPKAVAGAKIWVK 337
            + ++GD S +AA  GK+A  + ++  KI ++
Sbjct: 970  LDILGDVSIIAANAGKVASTRPISSKKITLR 1000


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 337 FYPYLGSRYCFWQGYF 384
           F+PY    Y +W GYF
Sbjct: 355 FFPYADRAYAYWTGYF 370


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 420 IGDTSSLAATLGKIALPKAVAGAKIWVKLKLL 325
           + DT+SLA   G   L  AVA   +W  + ++
Sbjct: 126 LSDTTSLAVANGAAGLTSAVAAQTVWTPIDIV 157


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 203 HFVPTTSTDISPPIFLAAVSAFWVAGDNTSLLCSAKTNVLCKRRSCAVKNR 51
           HF P  S  +   + LA       +G +TSLL   K     +R++ +  NR
Sbjct: 432 HFSPALSRLLDVLVTLAQTGPIESSGTSTSLLSQTKLTGYSRRQTPSANNR 482


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -1

Query: 412 HIKFGSHPRQNSLAKSSSGSQ 350
           H K G HP Q SLA SS GSQ
Sbjct: 106 HRKLGLHPLQESLA-SSHGSQ 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,377
Number of Sequences: 28952
Number of extensions: 153750
Number of successful extensions: 371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)