Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E19
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 113 8e-27
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 113 1e-26
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 29 0.23
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.39
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 2.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 3.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 4.8
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 6.4
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 8.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.5
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 24 8.5
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 24 8.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 8.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 8.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 113 bits (273), Expect = 8e-27
Identities = 60/114 (52%), Positives = 75/114 (65%)
Frame = +1
Query: 1 ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKK 180
ELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+ +K
Sbjct: 89 ELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTPNP-----KSKHVQRK 142
Query: 181 YLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGKELEFYLRKI 342
+ +R SKV+ LE QF GRL A V+SRPGQ GR D YILEG+EL FYLR++
Sbjct: 143 HSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 113 bits (271), Expect = 1e-26
Identities = 60/114 (52%), Positives = 75/114 (65%)
Frame = +1
Query: 1 ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKK 180
ELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+ +K
Sbjct: 89 ELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATPTP-----KSKHVQRK 142
Query: 181 YLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGKELEFYLRKI 342
+ +R SKV+ LE QF GRL A V+SRPGQ GR D YILEG+EL FYLR++
Sbjct: 143 HSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 29.5 bits (63), Expect = 0.23
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 94 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 222
PL R+K +LT E + + S T+KK+ + + SK G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.39
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 40 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 207
V DA ++ E ++ +KK +KL EA+ K++ +K KK+ +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 2.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 78 FIPLPERCGIHHDNSILYQ 22
F+P PE C I+H+ I Q
Sbjct: 477 FLPAPEECNIYHNEHIQVQ 495
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 135 LSLSELGTFLPSEW 94
LSL+E GTFL EW
Sbjct: 1554 LSLNECGTFLQKEW 1567
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 85 YLLPLGRKKGAKLTE 129
Y+LPLGRK K TE
Sbjct: 492 YILPLGRKTARKCTE 506
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 6.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 145 INKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGK 315
++ K +K A + L RQ+ K EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 88 LLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 219
+LPL K EAE+ ++ K T LSR+ +K + G
Sbjct: 152 VLPLITKHLRLFVEAEQLVVGNKAVSFTDHSELSREVAAKYDHG 195
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.2 bits (50), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 165 KDSEEVPEQAAPVQGR 212
K +EE+PE P++GR
Sbjct: 221 KKAEEIPESLPPIKGR 236
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.2 bits (50), Expect = 8.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 58 PFRQWYESHYLLPLGRKKGAKLTE--AEEAIINKKR-SQKTAKKYLSRQRLSKVE 213
PF+QW E L L K+ KL E +EE+ + K++ + + ++ + L K++
Sbjct: 334 PFKQWLEQ---LKLKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLD 385
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/73 (19%), Positives = 33/73 (45%)
Frame = +1
Query: 52 ATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQ 231
+TP + H + KKG+K+ A++ ++R + A++ + + K +E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 232 FHTGRLLACVASR 270
+LA + +
Sbjct: 814 TDPQTILAILKQK 826
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 118 KLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 219
+L E+E+ + S ++KY SRQR + G
Sbjct: 717 RLIESEDKGYRSRSSSPASRKYRSRQRYRRSYAG 750
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -1
Query: 241 QCGIAPPD--HPLPWTGAACSGTSSLS 167
+ G A P HP PW A+ S +SS S
Sbjct: 395 ESGAASPQAGHPPPWAAASTSVSSSTS 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,403
Number of Sequences: 5004
Number of extensions: 33222
Number of successful extensions: 92
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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