Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E19
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 162 1e-40
SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2) 32 0.23
SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09) 32 0.23
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 31 0.30
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 29 1.6
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 28 2.8
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 4.8
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 4.8
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_49603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_42722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_48901| Best HMM Match : Astacin (HMM E-Value=2.8e-15) 27 8.5
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 27 8.5
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 162 bits (393), Expect = 1e-40
Identities = 75/114 (65%), Positives = 91/114 (79%)
Frame = +1
Query: 1 ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKK 180
ELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NKKRS +K
Sbjct: 73 ELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRK 132
Query: 181 YLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGKELEFYLRKI 342
+R+ +KV G+EEQF TGRL ACV+SRPGQ GR D YILEGKELEFY++K+
Sbjct: 133 LEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKL 186
>SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)
Length = 133
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 46 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 213
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QRL +E
Sbjct: 53 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 108
>SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)
Length = 193
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 46 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 213
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QRL +E
Sbjct: 87 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 142
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 31.5 bits (68), Expect = 0.30
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 154 KRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGK 315
++S+K +K + +L+ +EG E H G LL S C R Y ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.9 bits (64), Expect = 0.91
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 151 KKRSQKTAKKYLSRQRLSKVEGGLEE 228
K+R QK K Y RQR +++ LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 61 FRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 213
F Q H++ +KKG + + A+ +R + AK+ LS Q ++VE
Sbjct: 930 FDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVE 980
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 133 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEG 312
E ++ KR K+ L + SK++ E+ RL AC+ G C A+ + EG
Sbjct: 1353 ETLVLAVKRRMKSLLAELDSRSESKLDKLRTEKV---RLEACLRGAQGSCEFAETVLSEG 1409
Query: 313 KELE 324
+LE
Sbjct: 1410 NDLE 1413
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 1 ELVRTKTLVKNAIVVVDATPFRQWYESH 84
E + +VK +IV VD PF W++ +
Sbjct: 86 EHIERNVIVKGSIVQVDNKPFEDWFQEY 113
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 307 PKCNXRRDRTDRADSPHMLTAVQCGIAPPDHPLPWTGA 194
P C R +D DS ML G P D +P T A
Sbjct: 1934 PACGLRGSTSDLHDSISMLPETTIGPVPQDSSVPTTSA 1971
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 38 LSWWMPHLSGSGMKATTCCHSEGRKVPSSLRL 133
L+ WM HL + CH+EGR + L L
Sbjct: 1881 LTIWMKHLENWPLHMPIVCHAEGRTTAAILLL 1912
>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 310 GKELEFYLRKIXIXRGGKADMCNNIQEIN 396
G+ LE Y K + R K C+ I E+N
Sbjct: 69 GRLLEIYSAKFGVTRKDKCGKCDKINELN 97
>SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 50 MPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AGS 196
+ L ++ H+EGRK P + + S T + +R RRS+ A S
Sbjct: 119 LSRLENEQLERRQALHAEGRKPPVNRAKERRSSTAHQKRRSRRSSIAMS 167
>SB_49603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 256 CVASRPGQCGRADXYILEGKELEFYLRKIXIXRGGKADMCNNIQEINFKKQK 411
CV P + D + ++G+ +L + GG A +C +++E K+K
Sbjct: 25 CVILSPPRLSVIDAFAVDGQPFP-HLEHALLEDGGNATVCYDLEEDKGNKEK 75
>SB_42722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 168 DSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARS 278
D + V E+ A +GR W GG +P+ S+ +AR+
Sbjct: 79 DVDAVGERGA-TKGRQWPGGVMPYVIDSSLSSSAARA 114
>SB_48901| Best HMM Match : Astacin (HMM E-Value=2.8e-15)
Length = 249
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 168 DSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARS 278
D + V E+ A +GR W GG +P+ S+ +AR+
Sbjct: 79 DVDAVGERGA-TKGRQWPGGVMPYVIDSSLSSSAARA 114
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 100 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 213
G+KK +K E NKKR +K KK ++ SK+E
Sbjct: 373 GKKKTSKDATEESEAPNKKRKEKKKKK-KKKKASSKIE 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,909
Number of Sequences: 59808
Number of extensions: 270291
Number of successful extensions: 851
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -