Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E19
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   138   2e-33
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   134   3e-32
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   0.98 
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    28   2.3  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    27   4.0  
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    27   4.0  
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi...    27   4.0  
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    27   6.9  
At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family pr...    27   6.9  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    26   9.1  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  138 bits (333), Expect = 2e-33
 Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 10/129 (7%)
 Frame = +1

Query: 1   ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKK-GAKLT-----EAEEAII----N 150
           ELVRTKTLVK+AIV VDA PF+QWY SHY + LGRKK  A  T     E EEA +     
Sbjct: 90  ELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEE 149

Query: 151 KKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGKELEFY 330
            K+S    +K  SRQ    ++  +E+QF +GRLLAC++SRPGQCGRAD YILEGKELEFY
Sbjct: 150 VKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFY 209

Query: 331 LRKIXIXRG 357
           ++KI   +G
Sbjct: 210 MKKIQKKKG 218


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  134 bits (323), Expect = 3e-32
 Identities = 68/122 (55%), Positives = 84/122 (68%)
 Frame = +1

Query: 1   ELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKK 180
           ELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    +K
Sbjct: 90  ELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRK 145

Query: 181 YLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADXYILEGKELEFYLRKIXIXRGG 360
              RQ    ++  LEEQF +GRLLAC+ASRPGQCGRAD YILEGKELEFY++K+   +G 
Sbjct: 146 LEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205

Query: 361 KA 366
            A
Sbjct: 206 NA 207


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 4   LVRTKTLVKNAI-VVVDATPFRQWYESHYLLPLGRKKGAKLTEA 132
           L  T  L  NA   VVD      ++ES+Y+LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 67  QWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 207
           QW+  +       +      ++E+ I NKK+S+  +K   S+Q+ SK
Sbjct: 539 QWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASK 585


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 135 GSHHKQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWT 245
           G   K K Q   ++EVPE   PVQ  GW      HWT
Sbjct: 663 GDFEKDK-QEVLNQEVPEPEKPVQVAGWG-----HWT 693


>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 316 LYLPKCNXRRDRTDRADSPHMLTA 245
           L LPKC  RR+  +R   PH + A
Sbjct: 337 LLLPKCARRREHANRVFKPHQVGA 360


>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat.  Gene
           continues on the 3' end of BAC F19G10 gb|AF000657 gene
           F19G10.21
          Length = 703

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 135 LSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSI 31
           L++SE+  F+P  W+Q+    P+ E    H D S+
Sbjct: 13  LTVSEICKFIPQSWKQLPR--PISETSKTHDDESV 45


>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 249 QPSSVE-LLLQTTLYLGQALPAQVLLRCLL 163
           +PSS++  LL   L++ QALP   +LRC L
Sbjct: 191 RPSSLDAFLLSHILFIIQALPVTSVLRCKL 220


>At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family
           protein contains similarity to putative bHLH
           transcription factor GB:AAC63587 GI:3738090 from
           [Arabidopsis thaliana]
          Length = 308

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 82  HYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 213
           H LLP    K  K T  +EA+ + K  ++T +K L  Q+L K++
Sbjct: 93  HALLPQLPPKADKSTIVDEAVSSIKSLEQTLQK-LEMQKLEKLQ 135


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 141 HHKQKTQSKDSEEVPEQAAPVQGR 212
           HH Q +  KD EEV +   P++ R
Sbjct: 73  HHNQNSAKKDQEEVSQVPLPLECR 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,418,287
Number of Sequences: 28952
Number of extensions: 191558
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)