Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E18
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 190 1e-49
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 190 1e-49
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.001
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.89
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 1.5
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.7
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 6.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.2
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.3
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.3
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 190 bits (463), Expect = 1e-49
Identities = 96/138 (69%), Positives = 113/138 (81%)
Frame = +1
Query: 121 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 300
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 301 MMHGRNNGKKLMAVRIVXHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 480
MM+GRNNGKKL+A RIV HAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 481 QAVDVSPLRRVNQAISLL 534
QAVDVSPLRRVNQA++L+
Sbjct: 136 QAVDVSPLRRVNQALALI 153
Score = 28.7 bits (61), Expect = 0.67
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 542 GAREAAFRKLQTIAEC 589
GAREAAFR +++I+EC
Sbjct: 156 GAREAAFRNVKSISEC 171
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 190 bits (463), Expect = 1e-49
Identities = 96/138 (69%), Positives = 113/138 (81%)
Frame = +1
Query: 121 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 300
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 301 MMHGRNNGKKLMAVRIVXHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 480
MM+GRNNGKKL+A RIV HAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 481 QAVDVSPLRRVNQAISLL 534
QAVDVSPLRRVNQA++L+
Sbjct: 136 QAVDVSPLRRVNQALALI 153
Score = 28.7 bits (61), Expect = 0.67
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 542 GAREAAFRKLQTIAEC 589
GAREAAFR +++I+EC
Sbjct: 156 GAREAAFRNVKSISEC 171
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 277 VERLTNSLMMHGRNNGKKLMAVRIVXHAFEIIHLLTGENPLQVLVTAIINSGP 435
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.89
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 180 LQRHVRYLNVITTPSPKKFDFGNISRLW 97
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 358 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 510
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 106 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 243
ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 79 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 219
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 458 VVLVQFDVKPSMCPHYVVLTRLSRYCAPGAREAAF 562
+ +V KP CPH + + YC PG ++ F
Sbjct: 84 IAVVAVMCKPHRCPHIAMTGNVCVYC-PGGPDSDF 117
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 235 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVXHAFEIIH 375
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 216 IFCILLFYRNIILQRHVRYLN 154
I C+L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = -1
Query: 441 FSWTRINNSSHQNLQRVFTRQQVNNFKGMXNDTYSHKFLTIIAAVHH*GVSQTLHNRALS 262
++WT + ++Q V+ RQ + +T+SH ++ H S R+L
Sbjct: 163 WAWTLAHEGNYQMPLPVYVRQLLTGIPITPFETFSHPVAHLVVVTSH-NPSPFESLRSLI 221
Query: 261 FTESFVSVPA 232
+ ++S+PA
Sbjct: 222 NSIPYLSLPA 231
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 50 KKSPTRAAWLWTTCHYHSRLIF 115
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,564
Number of Sequences: 5004
Number of extensions: 53913
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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