Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E18
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 230 5e-61
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 225 3e-59
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 1.6
05_04_0064 - 17613070-17614749 29 2.8
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 29 3.7
03_01_0548 + 4099386-4099847,4100435-4101316 28 4.8
03_01_0547 + 4093196-4093657,4094267-4095148 28 4.8
03_01_0544 + 4082528-4082989,4083585-4084466 28 4.8
03_01_0543 + 4076981-4077442,4078145-4079026 28 4.8
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 28 6.4
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 8.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 230 bits (563), Expect = 5e-61
Identities = 111/142 (78%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 118 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 294
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 295 SLMMHGRNNGKKLMAVRIVXHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 474
SLMMHGRNNGKK+MAVRIV HA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 475 RRQAVDVSPLRRVNQAISLLCT 540
RRQAVD+SPLRRVNQAI LL T
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTT 151
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 542 GAREAAFRKLQTIAEC 589
GARE+AFR ++TIAEC
Sbjct: 152 GARESAFRNIKTIAEC 167
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 225 bits (549), Expect = 3e-59
Identities = 108/141 (76%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = +1
Query: 121 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 297
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 298 LMMHGRNNGKKLMAVRIVXHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 477
LMMHGRNNGKK+MAVRIV HA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 478 RQAVDVSPLRRVNQAISLLCT 540
RQAVD+SPLRRVNQAI LL T
Sbjct: 132 RQAVDISPLRRVNQAIYLLTT 152
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 542 GAREAAFRKLQTIAEC 589
GARE+AFR ++TIAEC
Sbjct: 153 GARESAFRNIKTIAEC 168
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 49 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 222
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_04_0064 - 17613070-17614749
Length = 559
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 426 FWSKRRLHQDRSCWYSSTSSRRCVPITSC*PGYLVIVHQEHVRLPLESF 572
FW RR+ + C Y S SS+ C I ++I + + ESF
Sbjct: 366 FWGYRRVLESILCCYRSESSQNCWEIVQSLIEQMIITFLDQLEKKSESF 414
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 554 PHVLLVHNNEIAWLTRRNGDTSTA*RRTVPAR---PILVESSL 435
P ++L ++ + A+L + GD STA +VPA P+ V S+L
Sbjct: 307 PSLILAYSGQAAYLIKNPGDLSTAFYSSVPAPLFWPMFVVSTL 349
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 87 VVHNHAARVGDFFGPVLLSHISHFYSQF 4
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 87 VVHNHAARVGDFFGPVLLSHISHFYSQF 4
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 87 VVHNHAARVGDFFGPVLLSHISHFYSQF 4
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 87 VVHNHAARVGDFFGPVLLSHISHFYSQF 4
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 336 GCTYRXTCL*NYSPADG*K-PSASSGDCYY*FWSKRRLH 449
GC +R L Y+P G K P + DC F K+R H
Sbjct: 625 GCVFRRQALYGYNPPKGPKRPKMVTCDCCPCFGRKKRKH 663
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 153 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 281
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,121
Number of Sequences: 37544
Number of extensions: 354300
Number of successful extensions: 890
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -