Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E17
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)           28   5.2  
SB_29263| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16)                 27   9.1  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   9.1  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    27   9.1  

>SB_29033| Best HMM Match : Ion_trans_2 (HMM E-Value=8.1e-29)
          Length = 387

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 60  FIDFKATEKLICLIILLGAYLI 125
           F+    T++L+CL ILLG YL+
Sbjct: 3   FVLASDTKRLVCLAILLGVYLL 24


>SB_29263| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16)
          Length = 491

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 399 RCI*HQKRDLYFSLYVSKTILVTSCVPAAATTF 497
           RCI H +   Y +LY    + + +C+  AA T+
Sbjct: 328 RCILHSRFSTYHNLYNLLLVTLNTCIMIAAYTY 360


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 512 SKEFMKRGCSRGHTASYKYSFRYVKR 435
           S +F+++GCSR  T  Y Y+   V++
Sbjct: 596 SYQFIEKGCSRDMTLQYSYTMSAVQQ 621


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 78   TEKLICLIILLGAYLIKLHNNSTKKQGCVWWALVVIKNSLPHPTYSD 218
            TEKL    +   AYL+ + + +T +   + +A+ +I   +P  T SD
Sbjct: 1146 TEKLTATFLRFCAYLLHVGDENTFRNKTLQFAVALIVREIPCVTSSD 1192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,690
Number of Sequences: 59808
Number of extensions: 220178
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)