Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E16
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.049
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.20
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 30 0.26
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.4
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 27 1.9
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 1.9
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 1.9
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 27 2.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 3.2
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.3
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.5
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 9.9
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.3 bits (70), Expect = 0.049
Identities = 20/128 (15%), Positives = 60/128 (46%)
Frame = +2
Query: 137 KDLPRLTDLHSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSL 316
K+L + D ++TL+A + + + +N+ + ++++L + + + +++ +L
Sbjct: 713 KNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVE-TL 771
Query: 317 TQGNTLTERAYNDISRSYESLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEV 496
TQ + ++++ + SY+S+ L M + +L ++ +++ + +
Sbjct: 772 TQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESESKLKTDCENLTQQN 831
Query: 497 SELIQNTE 520
LI N +
Sbjct: 832 MTLIDNVQ 839
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/92 (20%), Positives = 42/92 (45%)
Frame = +2
Query: 125 ESMWKDLPRLTDLHSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDI 304
E + ++L ++ S +++ + +R E K +RE + + E++
Sbjct: 542 EEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEV 601
Query: 305 QRSLTQGNTLTERAYNDISRSYESLRTEVQTL 400
++ + L+ER YND ++ L+ +QTL
Sbjct: 602 EKLTDEITQLSER-YNDKCHEFDELQKRLQTL 632
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/73 (20%), Positives = 35/73 (47%)
Frame = +2
Query: 164 HSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTER 343
H + ++ L+ ++ + +I+ + N+G +L+ +L NED+ L + +
Sbjct: 410 HHSTSEKLEELSKYVASIQDKERNNGQN-ALELQARIQQLERRNEDMYNKLLAEEIIRRK 468
Query: 344 AYNDISRSYESLR 382
+NDI ++R
Sbjct: 469 LHNDIQELKGNIR 481
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 254 TKLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESLR---TEVQTLGKSERV-- 418
T L E+ DR+ +T+ D + +T E A D + YE ++ E L SE V
Sbjct: 172 TTLPEVTDRIFSTSIDCNYTFKHFDTFEELAGFDFNSIYEKVKEITLETFALDDSESVQA 231
Query: 419 -MLETADXVLAT 451
M + AD ++ T
Sbjct: 232 TMYKMADTIINT 243
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 248 ITTKLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESL 379
I++K ++ + + + + L + N L + N+ISR+Y+ L
Sbjct: 457 ISSKFSQLAEEYESQLREKEEDLIRANRLKQDTLNEISRTYQEL 500
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.1 bits (57), Expect = 1.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 161 LHSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTL-T 337
L A +L ++ I N N S + L+E D+L+ N+ + SLT NTL
Sbjct: 174 LKQAMTSSLSKVSVVTSWILLNQANISSGLDIFLQECEDQLLILNDAREFSLTFLNTLKL 233
Query: 338 ERAYNDISRSY 370
R + + RSY
Sbjct: 234 ARDFPNEIRSY 244
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 230 ENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESLRTEVQTLGKS 409
E++ + T L+E+ D + N+ ++++ + TE + E +
Sbjct: 295 ESTTTNTTEVLKELND--IQENKS-RKNVEKATAATEEMLRGHHKPVEGTTATSEKESIK 351
Query: 410 ERVMLET-ADXVLATKKRVEYGVHQILMEVSELIQNTE*EHEP 535
E V LE D + ++R+E E+SELI + EH P
Sbjct: 352 EEVDLEVNGDGKVEAEERIELESSDSEKELSELIDFLKREHPP 394
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 194 ITTGIENIRQNDENSGSKITTKL-REMGDRLVATNEDIQRSLTQ 322
+ + N+ +DE S I + RE+ + ++ TN IQR+ T+
Sbjct: 557 VLLALTNLASHDEESRQAIVQECWRELDELIIETNPLIQRATTE 600
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 116 SDAESMWKDLPRLTDLHSAANQT-----LQAITTGIENIRQNDENSGS--KITTKLREMG 274
+D K L R +LH A T L+ I I +RQ DEN+ S +I ++L+ +
Sbjct: 1018 TDFPDFVKSLDRPPNLHVTALDTCFVIYLKVILISISRLRQVDENTNSIKRIVSRLQPLH 1077
Query: 275 DR 280
R
Sbjct: 1078 SR 1079
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 386 RYEVIHSYARCRCKRAPSVCFLVSDCAECL--RWSL 285
R + H A CK P+ +L++ CA+C+ +W +
Sbjct: 320 RKSLPHEQAVIDCKFLPNTPYLLTACADCVIRKWDV 355
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 521 ILYFGLVH*LPSESDGPRIRRAFW 450
I+Y+G LP SD P R A W
Sbjct: 351 IIYYGEEQRLPGGSDTPENRAALW 374
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 257 KLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESLRTEVQTLGKSERVML 424
KLRE + + ED+ + + + E IS + LR EV L K ++L
Sbjct: 1078 KLREDYTKALEQVEDLNKEIALKAGINESQPFPISEKEDPLRQEVYVLKKQNAMLL 1133
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 137 STYFLRQIVAFEFFLISFLDFP*LQSF 57
S + + +++F F SFL FP L SF
Sbjct: 169 SLFHISHLISFHFLFFSFLSFP-LLSF 194
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 242 SKITTKLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESL 379
S + K + D L+ TN+D TQ +++ND S S+
Sbjct: 193 STVLQKSHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSSSSI 238
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 230 ENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTER 343
E KI ++RE+ + A ++D+Q+S+ L ++
Sbjct: 342 EQKKMKIQKRMRELETQSFADDDDLQQSIAMQRRLAQK 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,313
Number of Sequences: 5004
Number of extensions: 42610
Number of successful extensions: 139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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