Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E16
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 0.62
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 31 0.62
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 31 0.82
01_01_0685 + 5257336-5257653,5259021-5259073,5259144-5259240,525... 31 0.82
04_01_0588 + 7657510-7657992,7658397-7658843 29 2.5
01_06_0759 + 31754616-31754647,31754862-31755077,31755186-317553... 29 2.5
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 3.3
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504... 29 3.3
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 28 4.4
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 27 7.6
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 27 7.6
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 31.1 bits (67), Expect = 0.62
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Frame = +2
Query: 224 NDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTER----------AYNDISRSYE 373
++ +K +++ + D ++ N D SL Q N TER A +D+ + +
Sbjct: 223 SESERANKAENEIQVLKDTILKLNSDKDTSLLQYNQSTERLSTLESELSKAQDDLKKLTD 282
Query: 374 SLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSEL 505
+ TEVQ L +E E + A ++V+ ++ + EL
Sbjct: 283 EMATEVQKLSSAEARNSEIQSELEALDQKVKMQQEELEQKQKEL 326
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 31.1 bits (67), Expect = 0.62
Identities = 22/105 (20%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = +2
Query: 206 IENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTERAY---NDISRSYES 376
IE +RQ E + KLR+ +++++ +++ + L + + + A+ ++ ++ E
Sbjct: 228 IERLRQAMERQMEQSMLKLRQSEEKVISLSKEKDQLLKERDAALQEAHMWRTELGKAREQ 287
Query: 377 LRTEVQTLGKS-ERVMLETADXVLATKKRVEYGVHQILMEVSELI 508
+ T+ ++ E+V AD K+ E +H + E EL+
Sbjct: 288 AVIQEATIARADEKVRASEADAAARIKEAAE-KLHAVEKEKEELL 331
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 30.7 bits (66), Expect = 0.82
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Frame = +2
Query: 224 NDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTER----------AYNDISRSYE 373
++ +K +++ + D ++ N D SL Q N TER A +D+ + +
Sbjct: 444 SESERANKAENEIQVLKDTVLKLNSDKDTSLLQYNQSTERLSTLESELSKAQDDLKKLTD 503
Query: 374 SLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSEL 505
+ TEVQ L +E E + A ++V+ ++ + EL
Sbjct: 504 EMATEVQKLSSAEARNSEIQSELEALDQKVKMQQEELEQKQKEL 547
>01_01_0685 +
5257336-5257653,5259021-5259073,5259144-5259240,
5259383-5259481,5259573-5259731
Length = 241
Score = 30.7 bits (66), Expect = 0.82
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +2
Query: 206 IENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTERAYNDISRSYESLRT 385
I ++ND + L + + L+ +E +QRS L + + SY+ L
Sbjct: 96 IVRAKRNDTGKVHEFINCLVDARNELLHKSEMVQRSCRIKKALLSNPCSRRANSYDRLCE 155
Query: 386 EVQTLGKSERVMLETADXVLATKKRVEYG-VHQILMEVSELIQNTE*E 526
+V L + + + AD +++++ +++L+E+S L++ E E
Sbjct: 156 QVHKLEAEHKRLKKDADIYNYIQEQLQMSESYKLLIELSALVEKAERE 203
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 134 WKDLPRLTDLHSAANQTLQAITTGIENIRQNDENSGSKITTKLR 265
WK L L D H + LQ +G E IR ++ G+ I K R
Sbjct: 78 WKGLSTLLDFHDSCKIDLQKGISGFEKIRFWEDIYGAPICKKPR 121
>01_06_0759 +
31754616-31754647,31754862-31755077,31755186-31755341,
31755446-31755503,31755618-31755935,31756026-31756265,
31756345-31756443,31756529-31756561,31756670-31756867
Length = 449
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 380 EVIHSYARCRCKRAPSVCFLVSDCAECLRWSLPDDHPS-LVTSLLFYYQNFRHSA*YFQY 204
++ +YA RC + SV CA C+ + + D +P T + NFR + +Y
Sbjct: 139 DIRFNYAVIRCTKLISVTLFAIHCAGCINYLIADRYPDPRRTWIGAVMPNFREDGLWIRY 198
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 188 VRFGWQHCVGPLIWGDLSTYFLR 120
V+FG+ +GP WG+LS F R
Sbjct: 29 VKFGYTGSIGPDFWGNLSADFTR 51
>01_05_0167 +
18849791-18849973,18850081-18850250,18850341-18850413,
18850729-18850839,18850947-18850992,18851085-18851148,
18851810-18851912,18851999-18852094,18852186-18852215,
18852434-18852533,18852761-18852845,18852965-18853088
Length = 394
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +2
Query: 155 TDLHSAANQTLQAITTGIENIRQ----NDENSGSKITTKLREMGDRLVATNEDIQRSLTQ 322
+DLH A ++ + +G E+ RQ ND++ + + REM + ++D + +
Sbjct: 36 SDLHDA-EESFYSARSGSEDDRQVSSSNDDDDSEEEEQEEREMDEEEDEEDDDDEEMNEE 94
Query: 323 GNTLTERAYNDISRSYESLRTEVQTL 400
+ N++ + Y +L+T Q +
Sbjct: 95 DDEDEGEEMNELEKEYRTLQTNQQNI 120
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 335 TERAYNDISRSYESLRTEVQTL-GKSERVMLET 430
TER ND++RS S R +++ + +SE++M E+
Sbjct: 600 TERLVNDLTRSARSAREKLEAIEERSEKIMRES 632
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 158 DLHSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQR-SLTQGNTL 334
+ H +AN AI T + I+Q + +KI+TKL + + + DIQ G T
Sbjct: 433 EAHQSAN--FDAIMTQLMQIQQGCQFLDNKISTKLISIENTCIQNRRDIQAIKYRLGTTS 490
Query: 335 TERAYNDISRSYESLRTEVQT 397
R + + + T + +
Sbjct: 491 RSRTFRKFKPAAKQEETVIDS 511
>02_02_0492 -
10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 167 SAANQTLQAITTGIENIRQNDENSGSKITTKLRE----MGDRLVATNEDIQRSLTQGNTL 334
+A ++QA+ T IE DE+ G + + R DR+ D+ R+L T
Sbjct: 57 AALMASIQAVATQIEVAVSEDEDGGGRAEARQRRGSVLYKDRIGTEPLDLARNLVPPGTG 116
Query: 335 TER 343
TER
Sbjct: 117 TER 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,217
Number of Sequences: 37544
Number of extensions: 254731
Number of successful extensions: 649
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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