Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E16
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 31 0.39
At4g18290.1 68417.m02714 inward rectifying potassium channel (KA... 31 0.68
At4g07530.1 68417.m01179 hypothetical protein 30 1.2
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 30 1.2
At1g16630.1 68414.m01992 expressed protein 30 1.2
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 29 2.8
At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /... 29 2.8
At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /... 29 2.8
At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /... 29 2.8
At5g46240.1 68418.m05691 inward rectifying potassium channel (KA... 28 3.6
At3g52000.1 68416.m05704 serine carboxypeptidase S10 family prot... 28 3.6
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 28 4.8
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 28 4.8
At5g10740.1 68418.m01245 protein phosphatase 2C-related / PP2C-r... 27 6.4
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 8.4
At5g17910.1 68418.m02100 expressed protein 27 8.4
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 27 8.4
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 27 8.4
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 209 ENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTERAY 349
E +ND NS S+ T K+ E+G + A +ED R +Q T + +
Sbjct: 383 EEFTENDSNSSSENTPKMSEIGP-VAADDEDRAREFSQDQTKPDHGH 428
>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2)
identical to inward rectifying K+ channel [Arabidopsis
thaliana] gi|12666980|emb|CAC28122; Shaker-type channel
(1P/6TM), PMID:11500563
Length = 697
Score = 30.7 bits (66), Expect = 0.68
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = -2
Query: 380 EVIHSYARCRCKRAPSVCFLVSDCAECLRWSLPDD-HPSLVTSLLFYYQNFRHSA*YFQY 204
++ +Y RC + SV CA C + + D H T + Y NF+ ++ + +Y
Sbjct: 188 DIRFNYFWTRCTKLISVTLFAVHCAGCFAYLIADQYHDPTKTWIGAVYPNFKETSVWSRY 247
Query: 203 R**SPVRFGWQ-HCVGPLIWGDLSTYFLRQIVAFEFFLISFLDF 75
W + +GDL R+++ F FF++ L F
Sbjct: 248 ----VTALYWSITTLTTTGYGDLHAENPREMLFFVFFMLFNLGF 287
>At4g07530.1 68417.m01179 hypothetical protein
Length = 818
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 285 TRRSPISRNFVVILLPEFSSFCLIFSIPVVIACKVWLAALCRS 157
T R IS F ++L P F + L+ +P ++ + L LCR+
Sbjct: 46 TSRRKISSFFFLLLSPSFLFYSLLLDLPSLLFSFISLVLLCRN 88
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/117 (25%), Positives = 55/117 (47%)
Frame = +2
Query: 167 SAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQGNTLTERA 346
++ +QT+QA + + + + I +++GD LVA ++ + G T
Sbjct: 340 TSVSQTIQAFSNASLRLPLDGD-----IMVDSKQLGDGLVAASK-----IVDGITQNVGN 389
Query: 347 YNDISRSYESLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSELIQNT 517
Y ++ ESL +E+ + +SER + E V+A K + + M S+LIQ T
Sbjct: 390 YMPKAKEMESLLSELTRVARSERSLTENC--VVALLKTQASQIEECSMR-SQLIQQT 443
>At1g16630.1 68414.m01992 expressed protein
Length = 845
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 29 SLADEAWHSKMTEVMENXXXXXXXXXXXXSDAESMWKDLPRLTDLHSAANQTLQAITTGI 208
SL++E + T+V+E +AES D L D+ SAA + Q TG+
Sbjct: 549 SLSEEGHGGQETDVVEGQEEYEENDQNNMEEAES---DAQLLDDVQSAAISSNQQEQTGV 605
Query: 209 ENIRQNDENSG 241
N+ E G
Sbjct: 606 ANVETVQEEEG 616
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 413 VHSYLVFEPRYEVIHSYARCRCKRAPSVCFLVSDCAECLRWSLPDDHPSLVT 258
V S+ V + YEV H AP+ C + + +R+ PD P++VT
Sbjct: 410 VRSHEVKDEGYEVEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVT 461
>At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 621
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +2
Query: 179 QTLQAITTGIENIRQNDENSGSKITTKLRE--MGDRLVATNEDIQRSLTQGNTLTERAYN 352
+ L++ TT + D++ S I+ RE M DR++ E IQ+ E++Y
Sbjct: 506 ELLRSQTTVSPSSLTEDDSRCSLISPPPREPTMKDRILPCLERIQK--------LEKSYE 557
Query: 353 DISRSYESLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSELIQN 514
DI ++ E + + +++ + L KR+ + ME++E++QN
Sbjct: 558 DIRNKPVAIPVEKERMLMDSLDRIKSVEFDLDKTKRLLHATVMKQMEITEMLQN 611
>At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 625
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +2
Query: 179 QTLQAITTGIENIRQNDENSGSKITTKLRE--MGDRLVATNEDIQRSLTQGNTLTERAYN 352
+ L++ TT + D++ S I+ RE M DR++ E IQ+ E++Y
Sbjct: 506 ELLRSQTTVSPSSLTEDDSRCSLISPPPREPTMKDRILPCLERIQK--------LEKSYE 557
Query: 353 DISRSYESLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSELIQN 514
DI ++ E + + +++ + L KR+ + ME++E++QN
Sbjct: 558 DIRNKPVAIPVEKERMLMDSLDRIKSVEFDLDKTKRLLHATVMKQMEITEMLQN 611
>At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 625
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +2
Query: 179 QTLQAITTGIENIRQNDENSGSKITTKLRE--MGDRLVATNEDIQRSLTQGNTLTERAYN 352
+ L++ TT + D++ S I+ RE M DR++ E IQ+ E++Y
Sbjct: 506 ELLRSQTTVSPSSLTEDDSRCSLISPPPREPTMKDRILPCLERIQK--------LEKSYE 557
Query: 353 DISRSYESLRTEVQTLGKSERVMLETADXVLATKKRVEYGVHQILMEVSELIQN 514
DI ++ E + + +++ + L KR+ + ME++E++QN
Sbjct: 558 DIRNKPVAIPVEKERMLMDSLDRIKSVEFDLDKTKRLLHATVMKQMEITEMLQN 611
>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
identical to K+ channel [Arabidopsis thaliana]
gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
PMID:11500563
Length = 677
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 380 EVIHSYARCRCKRAPSVCFLVSDCAECLRWSLPDDHPS-LVTSLLFYYQNFRHSA*YFQY 204
++ +Y RC + SV CA C + + D +P+ T + Y NF+ ++ + +Y
Sbjct: 188 DIRFNYFWIRCTKLISVTLFAIHCAGCFNYLIADRYPNPRKTWIGAVYPNFKEASLWNRY 247
>At3g52000.1 68416.m05704 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 482
Score = 28.3 bits (60), Expect = 3.6
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 176 NQTLQAITTGIENIRQNDENSGS--KITTKLREMGDRLVATNEDIQRSLTQGNTLTERAY 349
N TL + I + D SG+ K ++E+ + + A I T NT +
Sbjct: 312 NSTLSSEPKKCTTIMKADPCSGNYLKAYLNIKEVQEAIHANTTKIPYEWTSCNTKLLWEW 371
Query: 350 NDISRSYESLRTEVQTL-GKSERVMLETAD 436
N+ R Y SL +Q L GK RVML D
Sbjct: 372 NEKDR-YVSLTPILQELMGKGVRVMLYNGD 400
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 108 SYYLTQKVCGKISPD*RTYTVLPTK 182
+YYL ++ GKI PD Y VL TK
Sbjct: 197 AYYLQPRLFGKIIPDKCKYEVLSTK 221
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 108 SYYLTQKVCGKISPD*RTYTVLPTK 182
+YYL ++ GKI PD Y VL TK
Sbjct: 197 AYYLQPRLFGKIIPDKCKYEVLSTK 221
>At5g10740.1 68418.m01245 protein phosphatase 2C-related /
PP2C-related protein phosphatase 2C, alfalfa, PIR:T09640
Length = 354
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 NSGSKITTKLREMGDRLVATNEDIQRSLTQGN---TLTERAYNDISRSYESLRTE 388
+S SK ++ +GD +++NE Q + GN +T R + SRS ++L E
Sbjct: 292 SSSSKEAKEMPPLGDLAISSNEAKQVQIGSGNKPENVTNRKPDTASRSTDTLTLE 346
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 254 TKLREMGDRLVATNEDIQRSLTQGNT--LTERAYND 355
TKLRE L+A ++ SL GN +TE A D
Sbjct: 1387 TKLRERQKNLIARRNSVEESLPSGNVDQVTEVANQD 1422
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 27.1 bits (57), Expect = 8.4
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 143 LPRLTDLHSAANQTLQAITTGIENIRQNDENSGSKITTKLREMGDRLVATNEDIQRSLTQ 322
L +LTDLH+ + + IT + I++ DE + ++L +GD V +++
Sbjct: 1060 LEQLTDLHAISQSPPEIITEEADEIKEIDEG----LLSELDSIGDFNV---KEVVTDTEP 1112
Query: 323 GNTLTERAYND-ISRSYESLRTEVQTLGKSERVM 421
G + E A N + S E Q+ +S +M
Sbjct: 1113 GPSSIENAMNQAVVESMEKQPKSPQSDSRSGEIM 1146
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +2
Query: 302 IQRSLTQGNTLTERA-YNDISR-------SYESLRTEVQTLGKSERVMLETADXVLATKK 457
+++ T+GNT TER ND+ S ES T K E A+ V+ KK
Sbjct: 503 VEKGKTEGNTNTERVERNDVLEEATRRILSVESAERSSTTTSKETMTRCEVAEKVVKGKK 562
Query: 458 RVEY 469
+ ++
Sbjct: 563 KEDF 566
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = -2
Query: 446 PVRXLQFPT*HVHSYLVFEPRYEVIHSYARCR-CKRAPSVCFLVSDC-----AECLRWSL 285
P + ++ P H+ Y+ + SY+ C C +C+ S C +EC+ W
Sbjct: 12 PKQKVKIPCNHMLLYI------HLTQSYSYCAVCNGDYGLCYYCSRCNFQAHSECIEWPD 65
Query: 284 PDDHPS 267
DHPS
Sbjct: 66 TIDHPS 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,817
Number of Sequences: 28952
Number of extensions: 215529
Number of successful extensions: 607
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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