Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E15
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222496-1|BAD96216.1|  564|Homo sapiens eukaryotic translation ...    31   4.8  

>AK222496-1|BAD96216.1|  564|Homo sapiens eukaryotic translation
           initiation factor 3 subunit 6 interacting protein varian
           protein.
          Length = 564

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +2

Query: 293 LLRISEEMFNADINNAFNY-IQVSLQGKTSPMSKND-EASSNLLNVPENVWSGPTIRPFV 466
           LL I+  M+   I+ + +  ++     K   M K D +    L +     +  P +  + 
Sbjct: 370 LLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYD 429

Query: 467 ALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRTLMNFLVSKGLTHMNEYXEQVQ 646
            ++ NYHK     +    ++E +Q   ++TI +   + T M      G   + E   ++Q
Sbjct: 430 NVYPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ 489

Query: 647 LL 652
           LL
Sbjct: 490 LL 491


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,945,069
Number of Sequences: 237096
Number of extensions: 1673002
Number of successful extensions: 3168
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3164
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)