Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E14
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   0.73 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   3.9  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    25   6.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   6.8  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 227 LSPYGNATSNLTSAASNLLITLLKDNSSNSTEPL 126
           LSP+  + S++ S+ SN L     DN+ NS  PL
Sbjct: 81  LSPHSFSLSDMESSMSNWLNPFAFDNTMNSAPPL 114


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 214 PYGDKHEAFVALAKDAKYVDELLIAEVGVKDYG 312
           PYGD+ E++ AL K    V+E  +  +GV ++G
Sbjct: 113 PYGDRIESWKALEKG---VEEGKLRAIGVSNFG 142


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 73  LFLCISLVIPSTYQASTSSGSVELDELSFNKVISKFDAALVKFD-VAFPYGDKHEAFVAL 249
           ++L  S+ +P     +  +  ++ DE    +++ +    +V       P GD H     L
Sbjct: 424 MYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEGDYHIRITFL 483

Query: 250 AKDAKYVDELLIAEVGVKDYGE 315
           AK  +Y++  + A   + D  E
Sbjct: 484 AKGTEYIERFVKAHNEIMDLYE 505


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 303 FHADFGYQKFIHIFRVLCKCHE 238
           F A F Y++F H FR+L    E
Sbjct: 682 FPARFSYEEFAHRFRILLSSKE 703


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 349 HRIASLALHYPFHRNLSRRLRLSKVHPHISRPLQVPRR 236
           HR  S   H P+  +LSR  R S  + H  R  +  RR
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERR 184


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 80  KNNKRYCIISFCRDHRIILHFIV 12
           K  K+Y I+  CRD R+ L+F +
Sbjct: 267 KKFKKYQILEACRDVRMYLYFFL 289


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 181 DAALVKFDVA--FPYGDKHEAFVALAKDAKYVDELLIAEVGVKDYGEKDNE 327
           +AA  K+D+   FP+  +++  V+ +    Y    L    GVK  G+++ +
Sbjct: 338 NAAAKKYDLEAWFPFQGEYKELVSCSNCTDYQSRNLEIRCGVKKMGDREKK 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,290
Number of Sequences: 5004
Number of extensions: 38108
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)