Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E14
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    29   1.7  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    29   1.7  
07_01_0179 - 1259353-1259466,1260818-1261150,1261523-1261681,126...    28   5.2  

>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 40   SLQKLMMQYRLLFLCISLVIPSTYQASTSSGSVE 141
            SLQKL++   L+  C S +  ST Q STS G  E
Sbjct: 953  SLQKLVLINMLILECCSGLTASTVQMSTSQGDKE 986


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 319 PFHRNLSRRLRLSKVHPH 266
           P+HR  +RR+ L+ VHPH
Sbjct: 51  PYHRAFARRMALAGVHPH 68


>07_01_0179 -
           1259353-1259466,1260818-1261150,1261523-1261681,
           1261914-1261946
          Length = 212

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 378 FYYWEIIFSSTVLLR*R 328
           F+YWE IFS  VLLR R
Sbjct: 183 FFYWEKIFSLAVLLRVR 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,102
Number of Sequences: 37544
Number of extensions: 213919
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)