Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E14
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    28   4.7  
Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +1

Query: 79  LCISLVIPSTY-QASTSSGSVELDELSF-NKVISKFDAALVKFDVAFPYGDKHEAFVALA 252
           L  SL I S     S     VEL E +F +KVI+  D  +V+F    P+    ++ V   
Sbjct: 7   LLASLAITSVCGMYSKKDDVVELTEANFQSKVINSDDIWIVEFYA--PWCGHCKSLVPEY 64

Query: 253 KDAKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDNFPVVKLFLKGKSEPISFN 417
           K A    +  +A+VG  D  +  ++++   Y      FP +K+F   K +P  +N
Sbjct: 65  KKAASALKG-VAKVGAVDMTQ--HQSVGGPYNV--QGFPTLKIFGADKKKPTDYN 114


>Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical
           protein C25D7.6 protein.
          Length = 812

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
 Frame = +1

Query: 181 DAALVKFDVAFPYGDKHEAFVALAKDAKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKD 360
           D+ L +FD+ F   D+H+A     KDA   + +L      +  GE D   L    G G +
Sbjct: 476 DSLLSRFDLIFVLLDEHDA----DKDANVAEHVLKLHT-YRTQGEADGTVL--PMGGGVE 528

Query: 361 NFPVVKLFLKGKSEPI--------SFNDAKGFTTDELRRFV 459
               + +  K  S  I           D K  T D +R+++
Sbjct: 529 TISTINMETKKASSSIYEENTQWAGIQDTKILTMDFMRKYI 569


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 306 IFHADFGYQKFIHIFRVLCKCHEGFMFV--SIRERNVEFNKCCIKFTNN 166
           IF   F    +IHIF  LC     F+F+  SI    V F++  IKF  N
Sbjct: 31  IFLIQFVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVSFSR-FIKFQTN 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,420
Number of Sequences: 27780
Number of extensions: 203446
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)