Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E14
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32920.1 68415.m04036 thioredoxin family protein similar to S...    30   1.1  
At1g27120.1 68414.m03305 galactosyltransferase family protein co...    29   2.5  
At4g27595.1 68417.m03964 protein transport protein-related low s...    28   3.3  
At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase fam...    28   3.3  
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam...    28   3.3  
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    27   5.8  
At1g31820.1 68414.m03908 amino acid permease family protein weak...    27   5.8  
At5g64790.1 68418.m08146 glycosyl hydrolase family 17 protein si...    27   7.7  
At3g20620.1 68416.m02609 F-box family protein-related contains w...    27   7.7  

>At2g32920.1 68415.m04036 thioredoxin family protein similar to
           SP|Q15084 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 440

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
 Frame = +1

Query: 70  LLFLCISLVIPSTYQASTSSGSVELDELSF-NKVISKFDAALVKFDVAFPYGDKHEAFVA 246
           LL +C      S+    +SS  V+L   +F +KV++     LV+F   +    K     A
Sbjct: 11  LLTICFGFFDLSSALYGSSSPVVQLTASNFKSKVLNSNGVVLVEFFAPWCGHCK-----A 65

Query: 247 LAKDAKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDNFPVVKLFLKGKSEPISFNDAK 426
           L    + V  +L     V       +++ A+ YG     FP +K+F+ GK+ PI +  A+
Sbjct: 66  LTPTWEKVANILKGVATVAAIDADAHQSAAQDYGI--KGFPTIKVFVPGKA-PIDYQGAR 122


>At1g27120.1 68414.m03305 galactosyltransferase family protein
           contains Pfam profile:PF01762 galactosyltransferase
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 43  LQKLMMQYRLLFLCISLVIPSTYQASTSSGSVELDELSF 159
           +Q L++     FLC+S  IP  ++  + SGS ++   SF
Sbjct: 18  VQFLLVVLLFYFLCMSFEIPFIFRTGSGSGSDDVSSSSF 56


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 HEAFVALAKD-AKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDN 363
           +E    L KD AK +D+L  +E   K+  EK  EALA Q+ A K +
Sbjct: 101 NEQIERLKKDKAKALDDLKESEKLTKEANEKLREALAAQHHAEKSS 146


>At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 430

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 247 LAKDAKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDNFPVVKLFLKGKSEPISFND 420
           +A+D  Y+D+++   +G  D  EK   +  K+ GA +     +++F  G + P+   D
Sbjct: 307 VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQ-----LRVFNLGNTSPVPVTD 359


>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 434

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 247 LAKDAKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDNFPVVKLFLKGKSEPISFND 420
           +A+D  Y+D+++   +G  D  EK   +  K+ GA +     +++F  G + P+   D
Sbjct: 308 VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQ-----LRVFNLGNTSPVPVTD 360


>At1g65010.1 68414.m07368 expressed protein similar to
           endosome-associated protein (GI:1016368) [Homo sapiens];
           similar to Centromeric protein E (CENP-E protein)
           (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 232 EAFVALAKD-AKYVDELLIAEVGVKDYGEKDNEALAKQYGAGKDNFPVVK 378
           E    L KD AK +D+L  +E  V++  EK  EALA Q  A +++F V K
Sbjct: 72  EQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRA-EESFEVEK 120


>At1g31820.1 68414.m03908 amino acid permease family protein weak
           similarity to asc-type amino acid transporter 2 [Mus
           musculus] GI:18148438; contains Pfam profile PF00324:
           Amino acid permease
          Length = 482

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 379 VLLLGNYLFQHRIASLALHYPFHRNLS--RRLRLSKVHPHISRPLQVP 242
           VLLL    FQ  IA+  L Y     L     +RL K HP  SRP ++P
Sbjct: 356 VLLLSGLSFQEIIAAENLLYCGGMILEFIAFVRLRKKHPAASRPYKIP 403


>At5g64790.1 68418.m08146 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 485

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 218 YGNATSNLTSAASNLLITLLKDNSSNSTEPLDVEAW 111
           +GN  S+  +   N+++ +LKDN  N  +  D ++W
Sbjct: 32  WGNIASHPLNP--NIVVQMLKDNKINKVKLFDADSW 65


>At3g20620.1 68416.m02609 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 391

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 343 YGAGKDNFPVVKLFLKGKSEPISFNDAKGFTTDELRRFVR 462
           YG+   ++ V ++F  GK  P     A+GF   E R F +
Sbjct: 152 YGSDVSDYKVYRIFCTGKIIPEERGPAEGFYVQEGRFFTK 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,589
Number of Sequences: 28952
Number of extensions: 185657
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)