Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E13
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.29 
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    26   4.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   6.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   8.4  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 19  IHPFNRKMSTAEHRSPQKTSKTTGFAPPASSEFPQPSPDRRSTLW 153
           +HPF   +   +H SP    ++  F    +   P  SPD R  +W
Sbjct: 269 VHPFKEWLLNLQHTSPDLYEESKDFEGYENDVKPYLSPDTRVCVW 313


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 314 SPSGSYRKIFSSEIPQCVKANQE*GDPQRIKLTAYGFSNGYHVPEDVAWVDHQVHKVD 141
           SP+ +   +F + IP  +   Q   DP+  +  A   ++   +  D  W     HKVD
Sbjct: 80  SPASASNDVFHAHIPNFLSVEQTPYDPE--QYAAEAEADAALLEHDAHWGQRIKHKVD 135


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 592 FLFFLVSIKIFISYIFTINVFI 527
           F+ FLV I +F ++++T+N+ I
Sbjct: 246 FVQFLVCIAVFATFMYTLNIRI 267


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 595 FFLFFLVSIKIFISYIFTINVFIYNKFNN 509
           +F+FF+ +IKIF S     ++ IYN F N
Sbjct: 294 YFVFFM-AIKIFFSEPIVSSLGIYNGFVN 321


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 131 GEGCGNSLDAGGAKPVVLEV 72
           G+GC  SL + GA+ +V EV
Sbjct: 226 GKGCSTSLRSQGARVIVTEV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,580
Number of Sequences: 5004
Number of extensions: 46620
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)