Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E13
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0367 + 18220099-18220905                                         29   2.1  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     29   3.7  
02_04_0156 + 20385545-20385723,20385833-20386097                       28   4.9  
09_03_0051 + 11902322-11903125                                         27   8.6  
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    27   8.6  
05_01_0304 - 2392526-2392828                                           27   8.6  

>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 25  PFNRKMSTAEHRSPQKTSKTTGFAPPASSEFPQPSP 132
           P + K++ A+ + PQ   K    +PP SS FP   P
Sbjct: 159 PMSPKVTPAQQQPPQPAEKVHDASPPPSSLFPPLPP 194


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 31  NRKMSTAEHRSPQKTSKTTG-FAPPASSEFPQPSPDRRSTL 150
           NR  ++A H  P  +S  +G  APP +S   QP+P   + L
Sbjct: 98  NRLPTSAPHSPPPSSSAPSGAVAPPFASSLIQPNPTLSNAL 138


>02_04_0156 + 20385545-20385723,20385833-20386097
          Length = 147

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 218 TAYGFSNGYHVPEDVAWVDHQVHKVDRRSGEGCGNSLDAGGAKPV 84
           T  G   G HV   V  VD +V + D+  G+G G+   +G  + V
Sbjct: 98  TQGGGEGGAHVDVVVVIVDDEVGEADKEKGKGGGSGKSSGQCERV 142


>09_03_0051 + 11902322-11903125
          Length = 267

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 49  AEHRSPQKTSKTTGFAPPASSEFPQPSPDRRSTL 150
           AE R+P    ++   APPA+SE   P+P  R ++
Sbjct: 87  AEPRTPTPRKRSPVAAPPAASEPQTPTPPPRPSV 120


>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 25  PFNRKMSTAEHRSPQKTSKTTGFAPPASSEFPQPSPDR 138
           PF  +M++ EHR PQ+     G     + E P   PD+
Sbjct: 270 PFRGRMNSPEHRFPQEDEYYGGAQQMPAYEEPYGRPDQ 307


>05_01_0304 - 2392526-2392828
          Length = 100

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 19  IHPFNRKMSTAEHRSPQKTSKTTGFAPPASSEFPQPSP 132
           ++  NR+ +T + R P  T+   GFA  ++S  P P+P
Sbjct: 34  VYGANRRATTVKAR-PATTAVAAGFAGSSNSRQPAPAP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,032
Number of Sequences: 37544
Number of extensions: 302801
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)