Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E13
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    29   2.9  
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)              29   2.9  
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               27   8.7  
SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 43   STAEHRSPQKTSKTTGFAPPASSEFPQPSP 132
            S  E+ SP  +S++T  + P+S+   QPSP
Sbjct: 965  SPPEYSSPPSSSQSTFLSSPSSTSLQQPSP 994


>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 255 ESGMRRSTENQINGLRVLEWLPRTGRRSLGRPPGPQGGPTI 133
           E  MRR    ++ G R++    R+G R  G+P G Q  PT+
Sbjct: 53  EEAMRRENNRKLFGSRIVVEYVRSGER--GKPVGGQTRPTV 91


>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
          Length = 582

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 213 LRVLEWLPRTGRRSLGRPPGPQGGPTI 133
           L+  E L RT RR  G  PGP+G P +
Sbjct: 277 LKKREELERTPRRQCGLSPGPRGDPEV 303


>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 309

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 22  HPFNRKMSTAEHRSPQKTSKTTGFAPPASSEFPQPSPDRR 141
           HP+        H  P +  +     PP   E+P P P RR
Sbjct: 183 HPYPPLRPEYAHPYPPRRPEYAHLYPPRRPEYPHPYPPRR 222


>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 75  LQDDRFCATRIQRIPATFTRSSVHLVDLVVYPGYVFRYVVAIREPVSR 218
           L D  F  + ++ IP  + ++ V + DLV Y G+ +  VVA  E   R
Sbjct: 262 LSDKTFFPSFLRTIPPDYIQAEV-MADLVAYYGWSYVSVVATDEDYGR 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,275
Number of Sequences: 59808
Number of extensions: 330601
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)