Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E13
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z35663-15|CAA84722.2|  228|Caenorhabditis elegans Hypothetical p...    27   7.7  

>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 595 FFLFFLVSIKIFISYIFTINVFIYNKFNNILSCNIFLN 482
           FF FF +S KI     F  N+F +  FNN L  +IF N
Sbjct: 323 FFNFFYISKKILTKKFFKKNLFFFLIFNN-LEKSIFSN 359


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  AEHRSPQKTSKTTGFAPPASSEFPQPSPDRRS 144
           A   SP  +S  T   PP+SS  P P+P RRS
Sbjct: 165 APRYSPPPSSTPTPTPPPSSSSSPTPTPLRRS 196


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 338 IAESNSAMSPSGSYR-KIFSSEIPQCVKANQE*GDPQRI 225
           ++E+NS M PSGS +   F S+I   V  N +  D QRI
Sbjct: 762 LSETNSEMKPSGSMKLNKFDSKIRNSVPINDKFHDMQRI 800


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 43  STAEHRSPQKTSKTTGFAPPASSEFPQPSPDRRSTLWTWWS 165
           S+ EHRSP+++      APP+SS  P  +     T+  W+S
Sbjct: 71  SSPEHRSPRRSKS----APPSSSNPPASASTFLETVKNWFS 107


>U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical
           protein C14E2.3 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 43  STAEHRSPQKTSKTTGFAPPASSEFPQPSP 132
           STAE   PQKT  T+    P  S FP P P
Sbjct: 127 STAEQEPPQKTQSTS--VLPNVSPFPTPPP 154


>Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical
           protein H01G02.3a protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  RKMSTAEHRSPQKTSKTTGFAPPASS 111
           R+ S A   S   +S + GFAPP+SS
Sbjct: 101 RRTSQASSSSSSSSSSSAGFAPPSSS 126


>Z35663-15|CAA84722.2|  228|Caenorhabditis elegans Hypothetical
           protein T04A8.4 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 67  QKTSKTTGFAPPASSEFPQPSPDRRSTL 150
           ++ S+   F PP S E P+P P R  ++
Sbjct: 159 RRNSEPVAFVPPVSKEAPRPRPIRSDSV 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,787
Number of Sequences: 27780
Number of extensions: 269362
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)