Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E13
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51650.1 68416.m05664 expressed protein                             30   1.0  
At3g51640.1 68416.m05663 expressed protein                             30   1.0  
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea...    29   3.1  
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea...    29   3.1  
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t...    28   5.4  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   7.2  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    27   9.5  

>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  SPQKTSKTTGFAPPASSEFPQPSPDRR 141
           S   T+ + GF+PP    FPQP  D R
Sbjct: 554 SSGSTTSSLGFSPPTEFVFPQPGEDER 580


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  SPQKTSKTTGFAPPASSEFPQPSPDRR 141
           S   T+ + GF+PP    FPQP  D R
Sbjct: 554 SSGSTTSSLGFSPPTELVFPQPGEDER 580


>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 836

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 270 TVCQGESGMRRSTENQINGLRVLEWLPRTGRRSLGRPP 157
           T+  G+ GMR +TE  IN  R   +     R  +G PP
Sbjct: 542 TLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPP 579


>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 837

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 270 TVCQGESGMRRSTENQINGLRVLEWLPRTGRRSLGRPP 157
           T+  G+ GMR +TE  IN  R   +     R  +G PP
Sbjct: 542 TLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPP 579


>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 182

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 404 LASKNQTQFELYD*I*IILFNLIAESNSAMSPSGSYRKIFSSEIP 270
           +ASKN     L+  + I+ F L A +N   +PS   R + + ++P
Sbjct: 1   MASKNSASLALFFALNILFFTLTAGTNCRCNPSPKPRPLPNPKVP 45


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 97  PPASSEFPQPSPDRRSTLW--TWWS 165
           P   S FP P PDR++ L    WW+
Sbjct: 145 PTPGSSFPFPKPDRQTALMLGEWWN 169


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 25  PFNRKMSTAEHRSPQKTSKTTGFA---PPASSEFPQPSPDRRSTLWTWWSTQATSSG 186
           P+ +  S   + SP    +T+G++   PP+S+  P P+P   S+  + +S    SSG
Sbjct: 136 PYQQPTSQHMYYSPYDQHQTSGYSSAPPPSSAPAPNPNPAPYSS--SLYSAPPYSSG 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,887
Number of Sequences: 28952
Number of extensions: 247287
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)