Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E12
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   1.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   9.6  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   9.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   9.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   9.6  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 205  AAGTHLLEFGDRFSNLRVVATQAGIIRKCPTTMQWFP 315
            A G  L  FG R   LRV A +  II   P+T   FP
Sbjct: 1441 ALGGFLERFGRRLWRLRVTAAEIRIICTDPSTNTLFP 1477


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 170 NTNPRGIGSHVMLPEHTYWNLATGF 244
           NT    + S V+  +H YW+L++GF
Sbjct: 478 NTRDIKVRSLVVKLKHKYWHLSSGF 502


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 286 KCPTTMQWFPQDFLLHRKLRPILESDRWGSHL 381
           + P+T+ W  +  +L R LR   ES +   HL
Sbjct: 88  RMPSTVVWMRRQRVLRRLLRKYRESGKIDKHL 119


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 169 LTILDHIMT*PSGEIVVKSTEPITCNR 89
           LT  DHI+  P  E  V + +  TC++
Sbjct: 150 LTTCDHIINLPENETYVTNLDNATCSK 176


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 208 QHHMRTNTSRISVLTILDHIMT*PSGEIVVKSTEPITCNRKEKRP 74
           Q H  TNT    V+T  + ++T   G  + ++ E +  ++K K P
Sbjct: 171 QFHKDTNTPVTEVMTPREELITTAEGISLERANEMLRKSKKGKLP 215


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 8   DNCLFFCNKK*INLVLKIC 64
           +NC F C+KK +  VL  C
Sbjct: 443 ENCSFVCHKKCVTKVLASC 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,743
Number of Sequences: 5004
Number of extensions: 46827
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)