Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E12
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060...    27   9.8  
04_04_0207 + 23602065-23604315,23604611-23605116                       27   9.8  
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226...    27   9.8  

>07_03_1795 +
           29603694-29605208,29605423-29605649,29605739-29606071,
           29606229-29606475,29606948-29607076,29607161-29607376,
           29607454-29607577,29608377-29608612
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 235 DRFSNLRVVATQAGIIRKCPTTMQWFPQDFLLHRKLRPILE 357
           ++ S +R      G++++    +   P+DF  HR ++ I E
Sbjct: 572 EQISRVRNTGVNPGVLKRVGQAITTLPEDFKPHRAVKKIFE 612


>04_04_0207 + 23602065-23604315,23604611-23605116
          Length = 918

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 89  SITRYRLSAFDHNFT*WLSHDVVQDG-ENTNPRGIGSHVML 208
           S+T     AF HNF   LS D+ Q+G     P+ IG  VML
Sbjct: 265 SLTGALPPAFGHNFRKLLSLDLSQNGFSGPFPKEIGKCVML 305


>02_04_0336 +
           22121913-22122111,22122295-22122344,22122538-22122661,
           22122810-22122917,22123610-22124265
          Length = 378

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 170 NTNPRGIGSHVMLPEHTYWNLA 235
           N   RG  + V L  H YWNLA
Sbjct: 185 NATARGKATPVNLAHHAYWNLA 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,642
Number of Sequences: 37544
Number of extensions: 311206
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)