Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E12
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99897-1|CAA68172.1| 2262|Homo sapiens calcium channel alpha1 su...    31   2.0  
U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent...    31   2.0  
U79664-1|AAB49675.1|  949|Homo sapiens alpha1A-voltage-dependent...    31   2.0  
AF100774-1|AAC77460.1|  980|Homo sapiens voltage-dependent P/Q t...    31   2.0  
AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-depende...    31   3.5  

>X99897-1|CAA68172.1| 2262|Homo sapiens calcium channel alpha1 subunit
            protein.
          Length = 2262

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A    + + D +S LRV++   G+ +KCP
Sbjct: 1835 RVWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCP 1871


>U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent
            calcium channel protein.
          Length = 2505

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A    + + D +S LRV++   G+ +KCP
Sbjct: 1834 RVWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCP 1870


>U79664-1|AAB49675.1|  949|Homo sapiens alpha1A-voltage-dependent
           calcium channel protein.
          Length = 949

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
           R W   D A    + + D +S LRV++   G+ +KCP
Sbjct: 522 RVWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCP 558


>AF100774-1|AAC77460.1|  980|Homo sapiens voltage-dependent P/Q type
           calcium channel alpha 1A subunit protein.
          Length = 980

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
           R W   D A    + + D +S LRV++   G+ +KCP
Sbjct: 320 RVWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCP 356


>AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-dependent
            calcium channel protein.
          Length = 2472

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A    + + D +S LRV++   G+ +KCP
Sbjct: 1834 RVWAEYDPAACGRIHYKDMYSLLRVMSPPLGLGKKCP 1870


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,362,120
Number of Sequences: 237096
Number of extensions: 1771026
Number of successful extensions: 2374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)