Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E12
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    31   0.41 
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    31   0.41 
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    31   0.41 
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        31   0.41 
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    31   0.41 
U80448-4|AAB37818.1|  293|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1326 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1362


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1326 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1362


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1445 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1481


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 932  RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 968


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 184  RYWFSCDAAGTHLLEFGDRFSNLRVVATQAGIIRKCP 294
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1445 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1481


>U80448-4|AAB37818.1|  293|Caenorhabditis elegans Hypothetical
           protein F59A3.6 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 116 FDHNFT*---WLSHDVVQDGENTNPRGIGSHVMLP 211
           FD NF     W SHD+ Q+ +N + + +G  + LP
Sbjct: 3   FDRNFDTSDGWSSHDISQERKNQSFQSLGDKLPLP 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,585
Number of Sequences: 27780
Number of extensions: 269745
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)