Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E11
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.29 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 225 LSHYETFYQAEHCMGMCRGTGVSVSKWIFNVTHCVVCTEFQLR*GVMKQRRLLI 64
           L  Y+ F   +    +    GV ++  IFN  HC + TE  L   ++K R +++
Sbjct: 787 LMGYQIFDWVQKEQSLAHSVGVFLT--IFNAAHCYLATELVL---MLKNRYIIL 835



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 144 IFNVTHCVVCTEFQL 100
           +FNV HC + +E  L
Sbjct: 532 VFNVVHCYLASELVL 546


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 308 AMNNHPTK*PSVTVFAILEVTSRHLQ 231
           AM   P +   +    ILE+T +HLQ
Sbjct: 64  AMKKDPARHSKLEKADILEMTVKHLQ 89


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 188 AWECAEAPESPSRNGSSMSPIVLCVL 111
           AW       SP  +  +  PIV C L
Sbjct: 84  AWGSLXRSSSPQTSAPTGPPIVRCAL 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,304
Number of Sequences: 336
Number of extensions: 2375
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)