Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E11
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    29   1.6  
09_02_0118 - 4451228-4452565                                           29   2.8  
12_02_0491 + 19648754-19650021,19650135-19650248,19650871-196514...    28   4.9  
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772...    27   6.5  
03_02_1008 - 13170630-13171481                                         27   6.5  
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640...    27   8.6  
02_04_0335 + 22117902-22119869                                         27   8.6  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 370 SLYLALTWGRPFWWRAISHILP*IIIR-----PSDLA*PCLPF 257
           S+ L L+W +PFW+  +SH    I +R      S L  PC P+
Sbjct: 504 SVILPLSWVKPFWFYLVSHGAHAIGLRERRWIASKLKMPCFPY 546


>09_02_0118 - 4451228-4452565
          Length = 445

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 304 MAEYEILPSTKMDVPTLTRDTMTDSLRRYSP 396
           MA   +LP     V  LT DT+ D LRR +P
Sbjct: 1   MASETLLPPPTTTVAALTDDTLLDILRRLAP 31


>12_02_0491 +
           19648754-19650021,19650135-19650248,19650871-19651427,
           19651446-19651529,19651566-19651783,19652004-19652309
          Length = 848

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 246 ISTSAGRLSHYETFYQAEHCMGMCRGTGVSV 154
           IST+ G+L+ +ET  +AEH +   R   V +
Sbjct: 501 ISTARGKLTCHETILEAEHSLETIRNGDVGI 531


>10_07_0133 +
           13274190-13274317,13274533-13276371,13277064-13277253,
           13277442-13277657
          Length = 790

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 190 LHGNVPRHRSLRLEMDLQCHPLC 122
           LHGN+   ++ +L M + CH  C
Sbjct: 695 LHGNLGNQKARQLRMKISCHEQC 717


>03_02_1008 - 13170630-13171481
          Length = 283

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 293 PTK*PSVTVFAILEVTSRHLQGDSHITKRSTRRSTAWECAEAP 165
           P    S+     +++T RHL GDSH      +     E  E P
Sbjct: 162 PATQSSIDAMPTVKITQRHLSGDSHCPVCKDKFELGSEAREMP 204


>03_06_0177 +
           32163393-32163443,32163711-32163803,32163875-32164071,
           32164157-32164262,32164391-32164537,32164637-32164756
          Length = 237

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 301 IIIRPSDLA*PCLPFWK*HLDICRATLTLRNVLPGGALHGNV 176
           ++  P+  A  C+PFWK  L    AT T+   L GG L G V
Sbjct: 136 LVFPPTATAILCVPFWK--LVAFFATPTITPALFGGGLLGYV 175


>02_04_0335 + 22117902-22119869
          Length = 655

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 220 TLRNVLPGGALHGNVPRHRSLRLEMDLQCHPLCCVY*VSITVRSDETTKITN 65
           T   V  GGA HG+  R    +L  + +  P   +   S  V SD  T +TN
Sbjct: 192 TDNTVSGGGARHGHARRRVVRQLSPEPEPEPSATMTETSFGVSSDVVTTVTN 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,071
Number of Sequences: 37544
Number of extensions: 284778
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)