Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E11
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_40937| Best HMM Match : Sybindin (HMM E-Value=5.9)                  28   5.0  
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_17226| Best HMM Match : zf-UBR1 (HMM E-Value=5.8)                   27   8.8  
SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 323 CPPPKWTSPR*REIQ*PILYDATHLMADNVTCV 421
           CPPP+  SP+ R+ +  +L   +      +TC+
Sbjct: 308 CPPPQTCSPQERKTERMVLVPGSECQCREITCI 340


>SB_40937| Best HMM Match : Sybindin (HMM E-Value=5.9)
          Length = 170

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 252 SDISTSAGRLSHYETFYQAEHCMGMCRGTGVSVSKWIFNVTHCVVCTEFQLR 97
           + + T  GR+S  +TF  A H    C  + + V++++      V C  F+L+
Sbjct: 80  TSMKTDYGRISLLQTFKDALHRTKTCSASIMEVTRFVCFFEQPVRCIMFELK 131


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 59  FIISNLRCFITPYRN*NSVHTTQWVTLKIHFETETPVPRHI 181
           F++++     T   +  S   TQ++T K+H  T+T  P  +
Sbjct: 724 FVLADFAALFTRATSIASARVTQYLTAKLHLNTKTEDPSQL 764


>SB_17226| Best HMM Match : zf-UBR1 (HMM E-Value=5.8)
          Length = 308

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 258 FGSDISTSAGRLSHYETFYQAEHCMGMCRGTGVSVSKWIFN 136
           FG       G L++        HC G CRG  ++++K + N
Sbjct: 38  FGCSSRARVGHLTYSVATSTGNHCQGECRGQLLALAKDLGN 78


>SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 183 PCSAPPGRTFRNVRVALQMSRCHFQNGKHGHA 278
           PC+A  G         L   RC  +NGK  HA
Sbjct: 517 PCAAAAGGPGAERAAGLARRRCRLRNGKRWHA 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,107
Number of Sequences: 59808
Number of extensions: 361207
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)