Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E11
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54030.1 68418.m06720 DC1 domain-containing protein contains ...    30   0.77 
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    28   3.1  
At5g37010.1 68418.m04438 expressed protein                             28   4.1  
At2g31010.1 68415.m03781 protein kinase family protein contains ...    28   4.1  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 27   5.4  
At5g54020.1 68418.m06719 expressed protein                             27   5.4  
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    27   5.4  
At5g19380.1 68418.m02309 expressed protein                             27   9.5  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    27   9.5  

>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 133 DIEDPFR----DGDSGASAHSHAVLRLVERFVM*ESPCRCR 243
           +IEDPF+     GD    +H   VLRL E +V+ ++  RCR
Sbjct: 261 EIEDPFKVINDKGDIIHFSHEEHVLRLDENYVIDDANMRCR 301


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 133 DIEDPFR----DGDSGASAHSHAVLRLVERFVM*ESPCRCR 243
           +IEDPF+     GD    +H   VLRL E +V  ++  RCR
Sbjct: 276 EIEDPFKVINEKGDIIHFSHEEHVLRLDEIYVTDDANMRCR 316


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 326 GNISYSAMNNHPTK*PSVTVFAILEVTSRHLQGDSHITKRSTRRSTAWECAEAPESPSRN 147
           GN   S+ NN P K   V+V A  +  S +  GD  + + + +R+     +   +SP+R 
Sbjct: 230 GNSVNSSNNNRPGK--FVSVPATDKALSNN-NGDGSVKRITVKRNVGKAASPRSQSPARA 286

Query: 146 GSSMSP 129
            S  SP
Sbjct: 287 ASQPSP 292


>At2g31010.1 68415.m03781 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 775

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 169 HRSLRLEMDLQCHPLCCVY*VSITVRSDETTKITNNKRYTIKL 41
           HR LR+  D+ C  L C++ + I  R  ++     +K +T+K+
Sbjct: 617 HRRLRMLRDI-CRGLMCIHRMKIVHRDLKSANCLVDKHWTVKI 658


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 133 DIEDPFR----DGDSGASAHSHAVLRLVERFVM*ESPCRCR 243
           +I+DPF+     GD    +H   +LRL E +V  ++  RCR
Sbjct: 283 EIKDPFKVINEKGDIVHFSHEKHILRLDENYVTDDANMRCR 323


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +1

Query: 133 DIEDPFR----DGDSGASAHSHAVLRLVERFVM*ESPCRCR 243
           +IEDPF+     GD     H   VLRL E +V      RCR
Sbjct: 253 EIEDPFKVVNEKGDIVHFCHEEHVLRLDENYVTDNVNMRCR 293


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 133 DIEDPFR----DGDSGASAHSHAVLRLVERFVM*ESPCRCR 243
           +I+DPF+    +GD    +H   VLRL E +V  ++  RC+
Sbjct: 271 EIKDPFKVINENGDIVHISHEEHVLRLDENYVTDDANMRCQ 311


>At5g19380.1 68418.m02309 expressed protein
          Length = 447

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 251 VTSRHLQGDSHITKRSTRRSTAWECAEAPESPSRNGSS 138
           +    + G   I  RS+RRS  W     P + S NGS+
Sbjct: 34  ICRNQINGAPPIVLRSSRRSRLWLIEAIPPAKSWNGSN 71


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 245 SRHLQGDSHITKRSTR-RSTAWECAEAPESPSRNGS 141
           SR   GD+  + R  + R  A  C +  +SPSR+GS
Sbjct: 484 SRKYHGDTQDSTREDKLRRHAENCHDGDDSPSRDGS 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,666,448
Number of Sequences: 28952
Number of extensions: 214285
Number of successful extensions: 481
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)