Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E09
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  30   1.2  
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_15357| Best HMM Match : Stig1 (HMM E-Value=2.4)                     28   4.9  
SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)                   28   4.9  
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)                   28   4.9  
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          27   8.6  
SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 249 KMYRKGADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 133
           K  RK    S    RA RK+RH+R+ +   R P+G   G
Sbjct: 118 KSSRKSRHKSDKKERASRKRRHSRSESPPVRHPSGSQSG 156


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 476 KLRHNLVQYRIYN*FILFNSVTLILKKHVISECRKSAAS*RDSQPP 339
           K + NLV+Y+I   F+ F++ T+  KKH  S       + R   PP
Sbjct: 153 KKQQNLVKYKI---FLCFDTSTMFTKKHTFSNVLHLELTPRGRAPP 195


>SB_15357| Best HMM Match : Stig1 (HMM E-Value=2.4)
          Length = 262

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 83  LSCRLIIYICVYFNRAAPPPSPAGLRPR---SVCVRACLCLRRAL 208
           +S  LI  +C+     A   S   + PR   S+C++ CL LR+ L
Sbjct: 14  ISLALIYTLCIVHTVHAQNDSDVAIDPRNIESLCIKRCLALRQHL 58


>SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)
          Length = 485

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 234 GADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLKYTQI*IMSRHESYPITLRRTP 55
           GADA+ +  RAR+ +R  +   +      GEG G  R   T     +R ++Y  T RR P
Sbjct: 123 GADANPSDARARQNKRMRKKLKEYTHLVRGEGKGKGRTTRT----TTRSKTY--TKRRGP 176

Query: 54  IR 49
           I+
Sbjct: 177 IK 178


>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 1195

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 369 RRVLTRLSTTTNISFFCIFLNFFMSSRTF-INISYLKKIYIKMYRKGADASTA 214
           R V + LST  +++    FL+FF+S+ +F IN S   +   +M   G +AST+
Sbjct: 636 RVVYSLLSTLAHLALSLSFLSFFLSALSFCINCSI--EFTFEMIAPGFNASTS 686


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 216 AYTRARRKQRHARTHTDRGRSPAGEGG 136
           ++TR+   QRH RTHT   R    E G
Sbjct: 382 SFTRSDELQRHLRTHTGEKRFQCDECG 408


>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 228 DASTAYTRARRKQRHAR--THTDRGRSPAGE 142
           DAS + TR R + R  R  T T+  RSP+GE
Sbjct: 351 DASNSPTRNRSRNRGGRPKTKTNNQRSPSGE 381


>SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 213  YTRARRKQRHARTHTDRGRSPAG--EGGGAA 127
            YTR+R  +RHA+     G +P G  EGG  A
Sbjct: 1019 YTRSRYNRRHAKQSLQPGPAPHGFLEGGEKA 1049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,043
Number of Sequences: 59808
Number of extensions: 268012
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)