Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E09
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   1.4  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   1.9  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    27   10.0 
U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    27   10.0 
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        27   10.0 
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical
           protein C50E3.16 protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 330 SFFCI-FLNFFMSSRTFINISYLKKIYIKMYRKGADASTAYTRA 202
           S +C+  L  F    T   I+Y   IY+K+ ++   ++TAYTRA
Sbjct: 70  SVWCMQLLELFYGWATATEIAYFAYIYVKVPKEDYKSATAYTRA 113


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 134 PPPSPAGLRPRSVCVRACLCLRRALVYAVLASAPFRYI 247
           PPPSP+    R   +R C   +RAL+YA +   P   I
Sbjct: 18  PPPSPSPNTFRIYSMRFCPAAQRALIYASVKKIPSEVI 55


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 249 KMYRKGADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLKYTQI*IMSRHESYPIT 70
           K  R   +  TA    R+++RH++  +++ +    +   AAR +Y Q   MS  E +   
Sbjct: 74  KWQRMSEEQRTALNEQRKRRRHSKCDSEQMKEANAKKAEAARARYHQ---MSEEEKFAYN 130

Query: 69  LRR 61
            R+
Sbjct: 131 RRK 133


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 127 GGAPALPGRASPPICMCACVP 189
           G APA P  A PP  MC C P
Sbjct: 31  GCAPAAPACAPPPPPMCGCAP 51


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 115 YTNINYEPTRELSHHIATHTYSFPLCTALQLNFISYIV 2
           +T I Y P   +  H+  H YS P+  A   NFIS  +
Sbjct: 208 FTTIPY-PGFTIIPHVKFHVYSAPIWIANSTNFISIAI 244


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 249 KMYRKGADASTAYTRARRKQRHARTHTDRGRSPAG 145
           K YR G DAS++  R+ R +   R H D  R P G
Sbjct: 438 KRYR-GRDASSSSGRSVRFEEEHRRHGDEYRDPRG 471


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 115 YTNINYEPTRELSHHIATHTYSFPLCTALQLNFISYIV 2
           +++I+Y P  E+  ++  H YS P+  A   NFIS  +
Sbjct: 200 FSSIHY-PGWEIFPNVKFHIYSAPVWVAAATNFISITI 236


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
            T04A8.14 protein.
          Length = 1521

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 97   EPTRELSHHIATHTYSFPLCTALQLNFISYIV 2
            +P  ++SH I TH Y FP  T  +   +   V
Sbjct: 1385 QPMIQISHEITTHKYFFPNGTCEETEAVEQFV 1416


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
            protein T04A8.14 protein.
          Length = 1521

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 97   EPTRELSHHIATHTYSFPLCTALQLNFISYIV 2
            +P  ++SH I TH Y FP  T  +   +   V
Sbjct: 1385 QPMIQISHEITTHKYFFPNGTCEETEAVEQFV 1416


>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 127 PIEIYTNINYEPTRELSHHIATHT--YSFPLCTA 32
           P+E  T+  Y+ T+ L+ H+ THT  Y+   C A
Sbjct: 161 PVENCTHPGYKCTKALNAHVRTHTRPYACHRCDA 194


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 97   EPTRELSHHIATHTYSFPLCTALQLNFISYIV 2
            +P  ++SH I TH Y FP  T  +   +   V
Sbjct: 1385 QPMIQISHEITTHKYFFPNGTCEETEAVEQFV 1416


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 385 LITCFFNINVTELKRIN*LYIRYCTRLCLNLYPC 486
           LITCF  +  +   R   ++ + CT++C++ Y C
Sbjct: 11  LITCFVQLEASPGDRS--IWYQECTQVCISKYNC 42


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 312 LNFFMSSRTFINISYLKKIYIKMYRKGADASTAYTRA 202
           L  F    T   I+Y   IY+K+ +    ++TA+TRA
Sbjct: 99  LEVFYGWATATEIAYFAYIYVKVPKTEYKSATAFTRA 135


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 LCIFQSGGAPALPGRASPPICMCACVPLFASRPSVCGA 222
           +C  +SGGAP  P    PPI + A      S+PS  GA
Sbjct: 211 MCNRKSGGAPTPPPPPPPPISLIA-----PSKPSGVGA 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,836
Number of Sequences: 27780
Number of extensions: 204330
Number of successful extensions: 633
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)