Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E09
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote...    29   1.3  
At2g28380.1 68415.m03449 double-stranded RNA-binding domain (DsR...    28   4.0  
At5g59790.1 68418.m07495 expressed protein                             27   7.0  
At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    27   7.0  
At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF...    27   7.0  
At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR...    27   9.3  

>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 220

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 186 HARTHTDRGRSPAGEGGGAARLKYTQ 109
           H+R  T R R P G GGG   +K T+
Sbjct: 172 HSRKSTSRHRKPKGSGGGELSMKKTK 197


>At2g28380.1 68415.m03449 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 434

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 ALPGRASPPICMCACVPLFASRPSV 213
           A P R +PP+ +   VP+FAS P V
Sbjct: 330 APPVRIAPPVTIRTAVPVFASAPPV 354


>At5g59790.1 68418.m07495 expressed protein
          Length = 423

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 240 RKGADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLKYTQI 106
           R  ADAST     RR++R A+   +  +SPA     +  L   +I
Sbjct: 203 RLAADASTQTDDRRRRRRPAKEEIEEVKSPASYENQSTELSRDEI 247


>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 173 CVRACLCLRRALVYAVLASAPFRYILM*IFFKY-EIFIKVREDIKKFKKIQKN 328
           C   CLC  R  + + LAS+P + I +  F +  +   K RE IK F +   N
Sbjct: 358 CGDVCLCKPREEIRSCLASSPVKVIKILKFGEISDDMEKQREQIKYFLETMPN 410


>At1g31660.1 68414.m03887 bystin family contains Pfam profile:
           PF05291 Bystin
          Length = 442

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 260 FFKYEIFIKVREDIKKFKKI 319
           F+ Y +  +VREDI+K KK+
Sbjct: 235 FYNYVLLPRVREDIRKHKKL 254


>At1g56540.1 68414.m06502 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1096

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 366  RVLTRLSTTTNIS--FFCIFLNFFMS 295
            R  T +S TTN+   F C+FL FF S
Sbjct: 1058 RKRTMISATTNLKKWFLCLFLFFFFS 1083


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,361
Number of Sequences: 28952
Number of extensions: 173933
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)