Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E06
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical pr... 208 2e-54
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 45 5e-05
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 38 0.006
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 33 0.21
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti... 30 1.5
U55363-9|AAA97967.1| 184|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical pr... 29 1.9
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 29 3.4
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 29 3.4
Z81045-4|CAB54202.2| 402|Caenorhabditis elegans Hypothetical pr... 28 4.5
AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical ... 28 4.5
Z66495-1|CAA91268.2| 502|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC006679-4|AAK84464.1| 139|Caenorhabditis elegans Hypothetical ... 28 5.9
>Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical
protein F59E10.3 protein.
Length = 184
Score = 208 bits (509), Expect = 2e-54
Identities = 93/175 (53%), Positives = 138/175 (78%), Gaps = 5/175 (2%)
Frame = +2
Query: 23 TMYIIKGMCILDNEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 199
++Y IKG+ ILD +GNR+LAKYYD+ T KEQKAFEK+LF+KT R +A+I++LDG+T
Sbjct: 10 SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69
Query: 200 SVYKSNVDLFFYVIGSSHENELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFD 379
+Y+SNVDL+FYV+GS+ ENEL L + L LY++VS++LR+NVE++ L D++D +ML+ D
Sbjct: 70 CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129
Query: 380 EICDRGVILDADPTSIVARAALRTEDVPLGEQTVAQV----LQSAKEQLKWSLLK 532
EICD G+I++ D ++V R AL++++V +Q+V+Q+ ++SA EQ KWSLLK
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQIGFSFMKSANEQFKWSLLK 184
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 44.8 bits (101), Expect = 5e-05
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Frame = +2
Query: 35 IKGMCILDNEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTSVYK 211
I G+ ILD +GN ++++ Y DV + E+ F L K +A +++ G++ Y
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60
Query: 212 SNVDLFFYVIGSSHENELILQSVLNALYESVSMLLR--RNVERRILFDNLDAVMLVFDEI 385
++++ I + N ++ VL+ALY+ V + + +E + DN + +FDE+
Sbjct: 61 KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117
Query: 386 CDRG 397
D G
Sbjct: 118 LDFG 121
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 37.9 bits (84), Expect = 0.006
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Frame = +2
Query: 32 IIKGMCILDNEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTSV-- 205
+IK + +++N G L K+Y P K+Q+ + + R + L+G T +
Sbjct: 1 MIKAILVINNHGKPRLLKFYQH--YPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDG 58
Query: 206 ------YKSNVDLFFYVIGSSHENELILQSVLNALYESVSMLLRRNVERRILFDNLDAVM 367
Y+ L+F S E+EL + ++ E++ E ++F ++D V
Sbjct: 59 NDYRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIF-HVDRVH 117
Query: 368 LVFDEICDRGVILDADPTSIVAR 436
+ EI G++L+ + I+ R
Sbjct: 118 HILGEIVMGGMVLETNMNEILQR 140
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 32.7 bits (71), Expect = 0.21
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 6/148 (4%)
Frame = +2
Query: 44 MCILDNEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLD--GLTSVYKSN 217
M + +G L K+Y P +++K + + R L+ L VYK
Sbjct: 5 MLLFSRQGKLRLQKWYT--AYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYKRY 62
Query: 218 VDLFFYVIGSSHENELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRG 397
L+F ++NELI V++ E + E I+F N + + DE G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIF-NFEKAYFILDEFLLAG 121
Query: 398 VILDADP----TSIVARAALRTEDVPLG 469
I + +I A+ ++ E+ P G
Sbjct: 122 EIQETSKKQVLKAIAAQDLIQEEETPQG 149
>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
protein 5 protein.
Length = 1198
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 281 LNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDR 394
L + + +S L ++ ++ +I+ N+ ++ LV DE+C R
Sbjct: 951 LERISKEISELTKKTLKAKIIPSNISSIQLVCDELCRR 988
>U55363-9|AAA97967.1| 184|Caenorhabditis elegans Hypothetical
protein ZC404.1 protein.
Length = 184
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 326 VERRILFDNLDAVMLVFDEICDRGVILDADPTSIVARAALRTEDVPLGEQTVAQ 487
VERR + D L+ E +GVI+ +P V R +RTEDV +TVA+
Sbjct: 103 VERREVVTARDLARLMPPE---QGVIVVCNPERSVCRIKIRTEDVRKEVETVAK 153
>Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical
protein F32B6.9 protein.
Length = 413
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 161 CESY*TNSFQMPSVL*LWATHPYRNTWRVFYYLHYPRCTFPLLCTLLVQ 15
C+SY T + +L + ++ WR F L++P +LCT+L Q
Sbjct: 70 CDSY-TRLIPLTFLLGFYVSNVVARWWRQFETLYWPEDILSVLCTVLHQ 117
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 89 YDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTSVYK-SNVDLFFYVIGSSHENEL 265
YD T K Q+A KN+ TH + L+ ++K S+ D SS+ +
Sbjct: 811 YDITSWATCKSQRAMLKNMRAHTHNVQYRL-----LSPMFKNSDFDAQSQYYNSSYPSSS 865
Query: 266 ILQSVLNALYESVSMLLRRNVERRILFDNLD 358
L+ L E S LLR+ +I F N +
Sbjct: 866 TDARFLSDLQEEYSTLLRQRSLAQISFKNCE 896
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +2
Query: 89 YDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTSVYKSNVDLFFYVIGSSHENELI 268
YD T K Q+A KN+ + H N + +L + S + + + SS+ +
Sbjct: 810 YDITSWATCKSQRAMLKNM--RAHTHNVQYRLLSPMNSDFDAQSQYY----NSSYPSSST 863
Query: 269 LQSVLNALYESVSMLLRRNVERRILFDNLD 358
L+ L E S LLR+ +I F N +
Sbjct: 864 DARFLSDLQEEYSTLLRQRSLAQISFKNCE 893
>Z81045-4|CAB54202.2| 402|Caenorhabditis elegans Hypothetical
protein C36F7.4b protein.
Length = 402
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 329 ERRILFDNLDAVMLVFDEICDRGVILDADPTSIVARAALRTEDV 460
E+ LF L V+LVF + C RG S+ + AL +DV
Sbjct: 59 EKMYLFALLCGVLLVFKQACSRGAPPTIQQPSMSSAVALLGQDV 102
>AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical
protein Y58G8A.4b protein.
Length = 433
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -2
Query: 393 LSHISSKTSIT---ASRLSKSIRLSTFLRRSILTDS*SALSTDCRINSFS 253
LS I + T I ASR+S SIR STF R +I + DC +S++
Sbjct: 356 LSKILNSTEIVSSFASRVSNSIRRSTFRRNNIDRVRKKQVVLDCEGSSYT 405
>Z66495-1|CAA91268.2| 502|Caenorhabditis elegans Hypothetical
protein C36A4.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 119 EQKAFEKNLFNKTHRANAEIIMLDGLTSVYK 211
E F K L+ T A+AEI +++GL++VY+
Sbjct: 238 ELSTFWKALYKYTPLADAEIPLVEGLSNVYE 268
>AC006679-4|AAK84464.1| 139|Caenorhabditis elegans Hypothetical
protein R13A5.3 protein.
Length = 139
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 35 IKGMCIL-DNEGNRILAKYYDKDVLPTTK-EQKAFEKNLFNKTHRANAEIIMLDGLTSVY 208
+KG I D+ + K YDKDVL TK + K+ + N ++EI +D ++Y
Sbjct: 25 VKGKLICNDDPAKDVRVKMYDKDVLMDTKLDDKSTDGNGEFYLTGGDSEISSIDPRVNIY 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,926
Number of Sequences: 27780
Number of extensions: 271583
Number of successful extensions: 833
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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