Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E06
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.3  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 188 DGLTSVYKSNVD 223
           DGLTSVY+  VD
Sbjct: 118 DGLTSVYRMQVD 129


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 57  IMKVIEYSPSITIRMC-CPQLKNRRHLKRICS 149
           I K  E SP+ TI +C C +   RRH + +C+
Sbjct: 89  IGKECELSPNSTIAVCVCMRKCPRRH-RPVCA 119


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 DDIKE*IHITFVDTGQSVQHY 179
           D I E  + T +D G S+QHY
Sbjct: 51  DIIPEQKNATKIDFGLSIQHY 71


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 48  ASWIMKVIEYSPSITIRMCCP 110
           + W  KVI+ +  + +  CCP
Sbjct: 215 SKWDFKVIKATKVLKMYACCP 235


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 188 DGLTSVYKSNVD 223
           DGLTSV++  VD
Sbjct: 243 DGLTSVFRIQVD 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,329
Number of Sequences: 438
Number of extensions: 2980
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)