Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E05
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    34   0.014
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    33   0.044
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    31   0.18 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   2.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   2.9  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   2.9  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   3.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.0  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   5.0  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    25   6.6  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    25   8.8  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   8.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.8  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 151 RTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVEEGFQSCFS 285
           RT+ Y+DF+         K VLD  CGTGI SM   + G +  ++
Sbjct: 239 RTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYA 283


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 338 RKNPKYDEWVIEEANWETLPRDIENFYHGASFDAVICLGNSFAHLLDEYEDQRIQKMCLK 517
           ++NP YD      + W+    D+      AS DA+  +    A   D+++        ++
Sbjct: 160 KQNPLYDAKFCSASVWDLAGSDLLRSIEEASIDAITLIFCFSALSPDQWQ------QAIE 213

Query: 518 NFAKCLKPGGL-LFIDHRNYD 577
           N  + LKPGGL LF D+   D
Sbjct: 214 NLYRLLKPGGLILFRDYGRLD 234


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 85  KDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVEE 264
           KD Y D  +    ++ +   + RT +Y+D ++        K VLD  CGTGI SM     
Sbjct: 16  KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75

Query: 265 G 267
           G
Sbjct: 76  G 76


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 260 KKGSNLVSVDASDKMLKHALKARWEKRKNPKYDEWVIEEANWETLPRDIENFY--HGASF 433
           K+ S  V ++    +LKH  K  W  R+N      ++ E  WE    DI + Y   G  +
Sbjct: 206 KEPSLHVIIEPHPDVLKHMRKNGWMDRENV-----IVYETTWENAINDIASKYVFDGIYY 260

Query: 434 DA 439
           DA
Sbjct: 261 DA 262


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -2

Query: 304 HFVRSVN*NKIGTLLLPASWSQSLFRKHRPALSCIRV 194
           ++V S++ N +GTLL+  SW +++   +    +C+R+
Sbjct: 139 NYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRM 175


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 360 SSYFGFFLFSHLALSACFNI--LSEASTETRLEPFFYQH 250
           + Y GFF F  + LS C  +  L +  T   +E FF QH
Sbjct: 245 TKYVGFFTFLSIGLSVCLELWYLWDIKTGLTVERFF-QH 282


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/15 (73%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
 Frame = +2

Query: 365 VIEEA-NWETLPRDI 406
           VI++A NWETLPRD+
Sbjct: 567 VIDKADNWETLPRDV 581


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 154 FFHYCLQ*ICSTLELPYRLHTDPLHPLKVY 65
           FF++ L  +  TL+  Y  H+D +HP  V+
Sbjct: 202 FFNFLLNSVTETLDEYYGNHSDVMHPKWVH 231


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 62  KVYLQRV*RISMQTVRQLERGTNSLETVMKEHKIIKTSSSGF*KNTDARKCWTVLAEQGL 241
           K+ L+R   +   T  +++  T   +   +E +I+   + G  KNT ARK    L + GL
Sbjct: 95  KLQLRR--ELDSLTAERVKNRTQEAQKEKEEKRIVTLQNDGGSKNTTARK-QKQLKKNGL 151

Query: 242 TP 247
            P
Sbjct: 152 RP 153


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +2

Query: 275 LVSVDASDKMLKHALKARWEKRKNPKYDEWVIEEANWETLPRDIENFYHGASFDAVICLG 454
           LV  D  ++ +K  L   + +R +  YD  +IE+ +     ++  N       + ++  G
Sbjct: 384 LVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNATNDIKDLQTEEIVEEG 443

Query: 455 NS 460
           NS
Sbjct: 444 NS 445


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 169 DFLIGLLKKHGC---KKVLDGACGTGIDSMMLVEEG 267
           DF+  + ++  C   KK+LD  CG GI S  +   G
Sbjct: 64  DFMTEVFRERNCFSGKKILDIGCGGGILSESMARLG 99


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 293 SDKMLKHALKARWEKRKNPKYDEWVIEEANWETL 394
           SD  L+  ++A+W+     K+   +IE  N +TL
Sbjct: 102 SDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTL 135


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 500 QKMCLKNFAKCLKPGG-LLFIDHRNYDAXIDSGATPG 607
           Q   +KN A  +KPGG L+F D+ + D   +   T G
Sbjct: 144 QLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSG 180


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 175 GSLYNFVFFHYCLQ*ICSTLELPYRLHTDPLHPLKVYLQISNEKLDPQTL 26
           GS Y    + + L+  C     P  +HTDP +   +       K++PQ +
Sbjct: 54  GSYYTTKIWSFSLK--CHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQDI 101


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 496  PLIFVLVQEMGEGISKADDRIERSAMVKVLDVAR 395
            PL  V  +   EG++K  +R++   M+ V+D+ +
Sbjct: 935  PLGLVFSEPTIEGLAKEIERMKSGEMISVMDIGK 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,373
Number of Sequences: 5004
Number of extensions: 60891
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)