Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E05
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 32 0.32
06_03_1200 - 28352647-28352712,28353097-28353216,28353314-283534... 31 0.55
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 3.0
01_01_0868 - 6780919-6783207 29 3.0
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802... 28 5.2
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 28 5.2
01_01_0867 - 6773411-6774682,6775008-6775643 28 5.2
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 28 6.8
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 6.8
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 27 9.0
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 27 9.0
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 27 9.0
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191... 27 9.0
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 127 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVEEG 267
+ +GD RT+ Y+D L+G VLD CGTGI S+ + G
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAG 313
>06_03_1200 -
28352647-28352712,28353097-28353216,28353314-28353466,
28354652-28354804,28354890-28354967
Length = 189
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 384 GKRYRATSRTFTMALRSMRSSALEIPSPISWTSTKISGYRRCA*RISQSVSNREVYYSSI 563
GK +SRT M L+S + W +TK++GY RC ++ ++
Sbjct: 94 GKALTTSSRTMVMMLQSKGYTPTNFAPGSRWVATKVTGY-RCELELTAD------HFKGY 146
Query: 564 TGTMTL*ST 590
GT+T+ ST
Sbjct: 147 DGTITIPST 155
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 127 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVEEG 267
K + D N+R YK+F+ G+ ++ G VL+ D + E+G
Sbjct: 762 KALQDENDRRACYKEFIDGVYREVGPSNVLEKEIERVKDKLQTAEQG 808
>01_01_0868 - 6780919-6783207
Length = 762
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 508 HLLYPLIFVLVQEMGEGISKADDRIERSAMVKVLDVA 398
H +PL G+ + DDRIE +A +K LDVA
Sbjct: 670 HWYFPLYAAAKVNEGDVLCLLDDRIEGNASLKELDVA 706
>05_03_0070 -
8023343-8023528,8023606-8023639,8024013-8024058,
8024139-8024389,8024473-8026001,8026128-8026496,
8026582-8026821
Length = 884
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 359 EWVIEEANWETLPRDIENFYHGAS 430
EW +EEA WE R + NFY AS
Sbjct: 644 EWALEEAPWEM--RRLHNFYMEAS 665
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 359 EWVIEEANWETLPRDIENFYHGAS 430
EW +EEA WE R + NFY AS
Sbjct: 552 EWALEEAPWEM--RRLHNFYMEAS 573
>01_01_0867 - 6773411-6774682,6775008-6775643
Length = 635
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 508 HLLYPLIFVLVQEMGEGISKADDRIERSAMVKVLDVA 398
H +PL G+ + DDR+E +A +K LDVA
Sbjct: 543 HRYFPLYAAAKVNEGDVLCLLDDRLEGNASLKELDVA 579
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 243 VNPCSASTVQHFLASVFFQKPDEEVFIILCS 151
++PCS V H +A+VFF D+ + L S
Sbjct: 645 LHPCSDRAVTHVVAAVFFGGADDREAVSLAS 675
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 260 KKGSNLVSVDASDKMLKHALKARWEKRKNPKYDEWVIEEANWETLPRDIENFYHGASFD 436
KKGS L S+ K + K +K+K+ K+ + + N E DIE GA FD
Sbjct: 653 KKGSFLSSLCGGRKKASKSKKKSSDKKKSNKHVDSAVPVFNLE----DIEEGVEGAGFD 707
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 359 EWVIEEANWETLPRDIENFYHGAS 430
EW +EEA WE R + NFY AS
Sbjct: 680 EWALEEAPWEM--RRLYNFYMEAS 701
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 252 HHGVNPCSASTVQHFLAS 199
HHG NP +A+T +F AS
Sbjct: 410 HHGTNPTTAATTTNFTAS 427
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 388 NVTARHRELLPWRFVRCGHLPWK 456
N+T HREL+P R +R L W+
Sbjct: 939 NLTLEHRELIPNRALRSAILEWQ 961
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 364 GNRRG*LGNVTARHRELLPWRFVRCGHLPWK 456
GN R + N++ +REL P R +R L W+
Sbjct: 1959 GNARSPMTNLSLENRELTPNRVLRSAILEWR 1989
>01_06_1397 -
37017468-37017561,37017763-37017836,37019128-37019193,
37019543-37019623,37019735-37019943,37020096-37020192,
37020497-37020514,37020597-37020727,37021040-37021088,
37021450-37021539,37021616-37021721,37021815-37021885,
37021963-37022037,37022059-37022120,37022677-37022887,
37023599-37024069,37024387-37024719
Length = 745
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 325 GFERVLQHFVRSVN*NKIGTLLLPASWSQSLFRKHRPALSCIRVFSKAR 179
G ERVL+ +R N I T + P S+F K RPA +R + A+
Sbjct: 244 GQERVLRPVIRLPERNAILTRINPEVRDTSVFVKLRPAWEDLRSYLTAK 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,444,469
Number of Sequences: 37544
Number of extensions: 384410
Number of successful extensions: 1122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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