Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E05
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)           101   6e-22
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         29   2.3  
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6)                    28   5.3  
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.3  
SB_16962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)                 27   9.2  
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   27   9.2  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score =  101 bits (241), Expect = 6e-22
 Identities = 41/82 (50%), Positives = 60/82 (73%)
 Frame = +1

Query: 25  IMSADQVFHSRSEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGC 204
           +MS D V+ +RS G+P+ G+ DQYADGKAA+ W  +IG   +RT++Y++F   LL++   
Sbjct: 148 VMSMDGVYRTRSLGVPATGIPDQYADGKAAKVWQHYIGGHKKRTESYREFFCNLLRERNI 207

Query: 205 KKVLDGACGTGIDSMMLVEEGF 270
             VLD +CGTG+DS+ML+E GF
Sbjct: 208 HNVLDVSCGTGVDSIMLLENGF 229



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +2

Query: 260 KKGSNLVSVDASDKMLKHALKARWEKRKNPKYDEWVI 370
           + G  + SVDASDKMLK AL+ RW +RK   +D+W I
Sbjct: 226 ENGFCVTSVDASDKMLKDALRIRWNRRKEEPFDKWGI 262


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +3

Query: 291  LLTKC*STRSKPGGRRGKTQNMMNG*SKRLIGKRYRATSRTFTMALRSMRSSALEIPSPI 470
            L+T+  ST   PG ++  ++ +++  S  ++   +RATS    +   S+ +S   +PS  
Sbjct: 937  LITRLISTSIVPGVKQTSSKLLVSSHSTPILTSIHRATSTRNVLEPSSIMTSTSILPSTS 996

Query: 471  SW 476
            SW
Sbjct: 997  SW 998


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -3

Query: 450 RQMTASNEAPW*KFSMSRGNVSQLASSITHSSYFGFFLFSHLALSACFNILSEASTETRL 271
           R+      A W ++++  GN++ L  +  H +++ +FL   +       +LS A  ET  
Sbjct: 401 RRSPTQEAADWIEYTLRHGNLTHLRPASVHLTWYQYFLLDVMLFMGVV-LLSVAMRETSP 459

Query: 270 EP 265
            P
Sbjct: 460 PP 461


>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 399 ATSRTFTMALRSMRSSALEIPSPISWTSTKISG 497
           A +R    A   MR    +IPS I+W  T++SG
Sbjct: 118 AAARNVIQADAMMRKPGFKIPSIINWHGTRVSG 150


>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 392 LPRDIENFYHGASFDAVICLGNSFAHLLDEYEDQRIQKM 508
           LP D+ENF HG+  + V+ +  SF+  +D+     + ++
Sbjct: 411 LPADLENFMHGSGDEGVVLV--SFSTYMDDMNQNVLDRL 447


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +1

Query: 58  SEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTG 237
           S  I  EG+ +  A     R W+  + +  +R   YK  +   +  +GC  VLD   G+G
Sbjct: 117 SSTIAREGL-ESVASALVER-WHFRMLNDRQRNLAYKKAISNAVS-NGCDIVLDIGSGSG 173

Query: 238 IDSMMLVEEGFQSCFS 285
           I SM  V+ G +  ++
Sbjct: 174 ILSMFAVQAGAKKVYA 189


>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 512 LKNFAKCLKPGGLLFI-DHRNYDAXIDSGATPGHSI 616
           L N  K LKPGGLL + D+  YD  +   A PGH +
Sbjct: 527 LLNIFKVLKPGGLLLLRDYGLYDHAMLRFA-PGHKL 561


>SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6)
          Length = 305

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 KKGSNLVSVDASDKMLKHALKARWEKRKNPKYDE 361
           KKG  L  V+++ K  K     + +KRKN +Y E
Sbjct: 226 KKGDPLSDVESTQKKRKKKKSKKGKKRKNQEYSE 259


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 KKGSNLVSVDASDKMLKHALKARWEKRKNPKYDE 361
           KKG  L  V+++ K  K     + +KRKN +Y E
Sbjct: 186 KKGDPLSDVESTQKKRKKKKSKKGKKRKNQEYSE 219


>SB_16962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 486 SYSSKRWAKEFPRQMTASNEAPW*KFSMSRGNVSQLASSITHSSYFGFFL 337
           SYS ++W KE P+     +     K S      S L S    + YFG F+
Sbjct: 1   SYSQQKWFKEMPKPGNVQSSY---KLSGLNQGPSDLQSDALPTEYFGTFM 47


>SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)
          Length = 298

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 294 EASTETRLEPFFYQHHGVNPCSASTVQHFLASVFF 190
           E +   ++ P   + +G+ PCS++   +FL  VF+
Sbjct: 94  ENNKSEKVAPCLEERNGIYPCSSTITGNFLLMVFY 128


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = +1

Query: 73  SEGVKDQYADGKAARAWNKFIGDS-----NERTQNYKDFLIGLLKKHGCKKVLDGACGTG 237
           S G KD+   G +      +  DS       RT  Y++ +         K VLD  CGTG
Sbjct: 137 SNGAKDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKIVLDVGCGTG 196

Query: 238 IDSMMLVEEGFQSCFS 285
           I SM   + G +  ++
Sbjct: 197 ILSMFAAKAGAKHVYA 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,373
Number of Sequences: 59808
Number of extensions: 435723
Number of successful extensions: 1308
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)