Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E04
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    29   0.51 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.3  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 494 HIFETTQQCWLMVNGKWWAYFCR--DASG*IMS 402
           +++ +T  CW  +   WWA   R  D+SG + S
Sbjct: 757 YVYSSTMLCWQRITEPWWAIGSREWDSSGLLQS 789


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 176 SDGTSGAMVKV---PILETKITSSVLLAPLIS 262
           S GT+ A   +   P+L  KI S + LAP IS
Sbjct: 222 SQGTAQAFASLSIHPLLNDKINSLIALAPAIS 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,305
Number of Sequences: 5004
Number of extensions: 37326
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)