Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E04
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584           31   0.38 
09_04_0418 - 17406313-17407419                                         31   0.38 
12_02_0080 + 13314740-13315892,13316725-13316732                       30   0.89 
12_02_0081 + 13342692-13343514,13343520-13343821                       30   1.2  
09_04_0138 - 15021764-15021953,15023112-15023464,15023878-150240...    27   6.3  
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    27   6.3  
06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244     27   6.3  
08_02_1435 + 27079184-27082006                                         27   8.3  

>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
          Length = 607

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184 NLRCYGQGTDTGNENHKLSALGSVDLTNQLIGGRY-SWI 297
           NL C G   +  N + KL+AL ++D+ N  + GR+ +W+
Sbjct: 236 NLSCNGLTGELPNLSAKLAALDTLDVANNYLSGRFPAWV 274


>09_04_0418 - 17406313-17407419
          Length = 368

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 334 HKHSYPGMEIIVCAGKVNLFHN--NDMIYPEASRQKYAHHFPFTINQHCWVV 483
           ++ S+ G    V AGK+ L H   N +  PE  RQ  A     T  +HCW V
Sbjct: 262 YRGSFHGTWEFVSAGKLGLDHPCVNPLASPEEWRQLGAGRVLVTTAEHCWFV 313


>12_02_0080 + 13314740-13315892,13316725-13316732
          Length = 386

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 274 IGGRYSWISLR*CQPPRSYPHKHSYPGMEIIVCAGKVNLFHNNDMIYPEASRQKY 438
           +GGR  ++  R C   RSY     YPGME +        FH+  ++Y +A++++Y
Sbjct: 310 LGGRMLFVG-RGCS--RSYEAADGYPGMEGVYFLDD-RSFHDPMVVYKDAAQRRY 360


>12_02_0081 + 13342692-13343514,13343520-13343821
          Length = 374

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 274 IGGRYSWISLR*CQPPRSYPHKHSYPGMEIIVCAGKVNLFHNNDMIYPEASRQKYAHHFP 453
           +GGR  ++  R C   RSY     YPGME +        FH+  ++Y +A++++   H+ 
Sbjct: 307 LGGRMLFVG-RGCS--RSYEAADGYPGMEGVYFLDD-RSFHDPMVVYKDAAQRRI--HYT 360

Query: 454 FTIN-QH 471
            T++ QH
Sbjct: 361 MTLDYQH 367


>09_04_0138 -
           15021764-15021953,15023112-15023464,15023878-15024066,
           15024171-15024299,15024469-15024642
          Length = 344

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 294 PAVAAPN*LVSEINGAKSTELVIFVSSIGTLTIAPEVPSELIVSSPACRRTLE 136
           PAV     ++     A +   V+F SSIG +T+ P    +++V   +C   LE
Sbjct: 107 PAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDE-SCWSDLE 158


>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 330 PSQTLISWNGDNCLC 374
           P Q+LISWN  N LC
Sbjct: 51  PEQSLISWNSSNHLC 65


>06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244
          Length = 187

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 175 F*WNLRCYGQGTDTGNENHK--LSALGSVDLT 264
           F WNL   G  +D  N N+K  L  +G VD++
Sbjct: 43  FGWNLPSMGSNSDQSNANNKGNLKYIGGVDIS 74


>08_02_1435 + 27079184-27082006
          Length = 940

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 D*FTIMSTATELPSQTLISWNGDNCLCW 377
           D     +T+ + P   L SW+G+NC  W
Sbjct: 33  DALVAFNTSIKDPDGRLHSWHGENCCSW 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,212
Number of Sequences: 37544
Number of extensions: 271049
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)