Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E04
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32270.1 68417.m04591 UDP-sugar transporter-related contains ...    28   3.0  
At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repe...    28   4.0  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    27   5.3  
At5g25757.1 68418.m03055 expressed protein                             27   6.9  
At5g25754.1 68418.m03054 expressed protein                             27   6.9  
At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    27   6.9  
At1g13650.2 68414.m01605 expressed protein                             27   6.9  
At1g13650.1 68414.m01604 expressed protein                             27   6.9  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    27   9.2  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    27   9.2  

>At4g32270.1 68417.m04591 UDP-sugar transporter-related contains
           weak similarity to Swiss-Prot:Q95YI5 UDP-sugar
           transporter UST74c [Drosophila melanogaster]
          Length = 364

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 144 CAGKRVNLQLILMEPQVLWSRYRYWK 221
           CAG  ++   I+    V WSR ++WK
Sbjct: 49  CAGNFLDFTCIIDSNHVFWSRVQFWK 74


>At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repeats
           (PF00400) (1 weak) submitForm();
          Length = 927

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 376 GKVNLFHN-NDMIYPEASRQKYAHHFPFTINQH 471
           G+V   H  N M+YPE   ++ + HF  T NQ+
Sbjct: 768 GQVKEMHPFNGMVYPEDEERRGSAHFALTPNQN 800


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 311 VNRHGATLTNTHILE-WR 361
           +N HG  LTN H+LE WR
Sbjct: 381 LNEHGLILTNAHLLEPWR 398


>At5g25757.1 68418.m03055 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 325 SYPHK-HSYPGMEIIVCAGKVNLFHNNDMIYPEASR--QKYAHHF 450
           +Y HK HS      I+    ++ F NNDMIY   S+  ++Y   F
Sbjct: 450 TYKHKTHSVDSDGRIISNADIDFFINNDMIYVVESKPAKRYGDFF 494


>At5g25754.1 68418.m03054 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 325 SYPHK-HSYPGMEIIVCAGKVNLFHNNDMIYPEASR--QKYAHHF 450
           +Y HK HS      I+    ++ F NNDMIY   S+  ++Y   F
Sbjct: 450 TYKHKTHSVDSDGRIISNADIDFFINNDMIYVVESKPAKRYGDFF 494


>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 479 TQQCWLMVNGKWWAYFCRDASG 414
           T + W+   G W A FC D++G
Sbjct: 105 TNRAWVGRTGSWRALFCSDSTG 126


>At1g13650.2 68414.m01605 expressed protein
          Length = 286

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 164 LTINSDGTSGAMVKVPILETKITSS 238
           L+I SDGTS +   +PIL+++  SS
Sbjct: 152 LSIRSDGTSASSFALPILQSEWNSS 176


>At1g13650.1 68414.m01604 expressed protein
          Length = 281

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 164 LTINSDGTSGAMVKVPILETKITSS 238
           L+I SDGTS +   +PIL+++  SS
Sbjct: 147 LSIRSDGTSASSFALPILQSEWNSS 171


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 PVPGCAGKRVNL 167
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 PVPGCAGKRVNL 167
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,731
Number of Sequences: 28952
Number of extensions: 206996
Number of successful extensions: 518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)