Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E03
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.61 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   1.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   2.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   4.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   4.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   5.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.5  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   7.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.5  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   10.0 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   10.0 
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   10.0 

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 208 YEFVTPLTSLVVVKPNE--TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 381
           Y   + +  + +V+ N+  T+  + E  ++PA  +++  S+P Y IS+ R  T+ L SLP
Sbjct: 483 YGHTSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 296 LFKNLRLHRSLYMIFPTLDQEP*LCNHSQVRN*PQILRTNTNHYLYQPI 442
           L K L+ HR  Y+IF    Q     NH+ ++   +I++T      Y+P+
Sbjct: 88  LLKELKKHRDSYVIFDCPGQVELFTNHNSLQ---KIIKTLEKELDYRPV 133


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 208 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISN 345
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS+
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISD 603


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 328 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 224
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 331 YDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGFKCG 501
           Y   NVR  ++ LQSLP+P L        Q  S+P +NR+G    + + ++S    G
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTLE-------QLESVP-FNRYGYVRIFPSTTLSSTASG 491


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 202 LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDI----SNVRPGTVAL 369
           L Y+F+  +T   VV P   +     ++       SSF  V +Y I     +V  G VA+
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFATSKDVSIGPVAV 193

Query: 370 QSLPSPQLTAD 402
            SL + ++ A+
Sbjct: 194 MSLVTSKVIAN 204


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 392 NCGLGSDCRATVPGLTLEISYTGTD 318
           NC    + +    G+TLE++Y  TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 277  ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 384
            E +D P  +E S  S+P+ D+SN   G + +   PS
Sbjct: 941  EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 548 FQIYVPLCNLL*NSSDPHLNPDTELV 471
           FQI   LC+ L   SDP+L P  E++
Sbjct: 387 FQIISSLCDKLGPHSDPYLIPALEVI 412


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 363 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 253
           Y   + V NI +       +LK+  I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 268 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 113
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +1

Query: 310 SFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSV 483
           +F+S+P+  I       +    + S    +  SY+ QP +   + R   +P  + N V
Sbjct: 176 AFSSIPIVSIDEYITWMITENLINSEPSNSSFSYEVQPSNYTTFCRMLDEPLPANNPV 233


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 268 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 408
           V+   +D P+  E+ F+ + V  + +V     +  + PSP L++  S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 65  CFSTGTGTFSFLSKCLLVY 9
           C  TGTG     SKC+ +Y
Sbjct: 684 CLQTGTGVKPDTSKCVAIY 702


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 ALKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASV 324
           A   E  TP  +L V  P + NA N+ +    +     FAS+
Sbjct: 519 ATPLELATPFANLNVSSPLDRNATNSSNTLNGSAMNDYFASL 560


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 133 HLFRPIIVLLLDTPRDAPMGSFHVFLQERGPSVS 32
           H     IV  +     AP   F +F+QE G SVS
Sbjct: 6   HNLEDPIVRAIRQKNQAPSHDFTIFVQEDGSSVS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,169
Number of Sequences: 5004
Number of extensions: 48756
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)