Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E03
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021) 29 1.9
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7) 29 3.4
SB_43296| Best HMM Match : DUF957 (HMM E-Value=4.3) 29 3.4
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09) 28 4.5
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 28 5.9
SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7) 27 7.9
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 27 7.9
>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 238 VVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQY 417
VV + ++ NA + +ESSF+ V + +SN LQSL P + +Y
Sbjct: 175 VVSESHDVPTNNALEIQYEEVKESSFSEVIIRTVSNNIKQCYELQSLTDPFIQDTPINEY 234
Query: 418 QPLSIPAY 441
PL Y
Sbjct: 235 CPLEHRPY 242
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 434 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 327
G G++W VS G G C +VP L I +T
Sbjct: 2663 GSMEGFWWSYVSMTTVGYGDRCPVSVPARILSIGWT 2698
>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
Length = 567
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 401 ILRTNTNHYLYQPIIDLAEILLTVLIPYQGSSAGLMSFTGGY 526
++RT+T+HYL ++ L I + QG+ A ++ G Y
Sbjct: 329 VMRTDTSHYLSGWLVKLISITFLTSLLAQGAYASVLRMRGQY 370
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 259 TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPA 438
T+A + S P +S F + +Y S+ + G+ + S+P TA SY P+
Sbjct: 2153 TSAPSPLSQQTPELFQSPFLNSNLYSASSFQ-GSQSFMSIPLVPTTATQSYVATRTQAPS 2211
Query: 439 YNRFGGDPSYSTNSV 483
G P +T S+
Sbjct: 2212 VLTLQGQPKSATGSM 2226
>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
Length = 421
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 340 SNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFG--GD-PSYSTNSVS 486
S VR T A+ SLP P + D + + + + +FG D P S SVS
Sbjct: 234 SEVRKTTTAILSLPDPGIHPDEQHSEENTPVEGHRKFGELSDVPEASQESVS 285
>SB_43296| Best HMM Match : DUF957 (HMM E-Value=4.3)
Length = 447
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 SVDKPA-FQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNR-FG 453
S +KP+ + + + + + +S+V G V L S + + L A ++
Sbjct: 54 SSEKPSHYSKKNTQQLGLASVSSVPSGNVKLSSAMTRNACLCQYHDNVELLCEALHQALP 113
Query: 454 GDPSYSTNSVSGFKCGSDE 510
G P YS+ ++ GF C +DE
Sbjct: 114 GFPLYSSKALDGFVCSTDE 132
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 455 PPNLL*AGIDNGWYWYEVSAVNCGLGSDCRAT 360
P ++ + N YEV +NCGLG C T
Sbjct: 431 PERIIKSRTQNKVECYEVQWINCGLGESCEPT 462
>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
Length = 441
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 434 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEI 336
G G++W VS G G C A+VP L I
Sbjct: 36 GSMEGFWWSYVSMTTVGYGDRCPASVPARILSI 68
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 319 SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAY 441
SVP S+VR T Q + +SY Y P + P+Y
Sbjct: 131 SVPSTSPSSVRSATPYYPQTQQQQSSVSSSYSYYPRAAPSY 171
>SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7)
Length = 426
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 407 RTNTNHYLYQPIIDLAEILLTVLIPYQGSSAGLMSF 514
RT++NH+ +P D +++ PY S L SF
Sbjct: 9 RTSSNHHCSRPYFDTVALIIVYHYPYYESFPLLRSF 44
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 217 VTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQS-LPSP 387
V+P TS++V + + ++++ E D P + + +S P +D P ++ S +PSP
Sbjct: 789 VSPRTSVIVEESDAESSIDEEDEDAPEYIDQVSSSPPQHD---YMPTQASVSSPVPSP 843
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,077
Number of Sequences: 59808
Number of extensions: 362648
Number of successful extensions: 1008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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