Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E03
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    29   2.3  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    28   5.2  

>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -2

Query: 196 TLKLSFQDCFP-----YSCLRREYQRHLFRPIIVLLLDTPRDAPMGSFHVFLQER 47
           T+  +F++ FP     ++ +++ YQ+H  +      ++ P+  P+ SFH++++ER
Sbjct: 595 TIPWNFKETFPDKSEQFAEIQKIYQKHSKK---AFRMNVPQKFPVSSFHIWIEER 646


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 377 SDCRATVPGLTLEISYTGTDANEDS*KAGLSTDSAFTAFV 258
           +DC  T+P LTLE++   T  N D+   G+     F  F+
Sbjct: 783 ADCLLTLPRLTLELTSKRTRDNIDNYVGGIHISGQFKGFM 822


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 437  PIIDLAEILLTVLIPYQ--GSSAGLMSFTGGYTGAHIFE 547
            PI+ L E+LL  ++P++       L+   G Y   HIFE
Sbjct: 923  PILSLQELLLQYVVPFKLHKIKLSLLHCAGMYVEKHIFE 961


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,384
Number of Sequences: 27780
Number of extensions: 270378
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)