Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E02
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    30   0.27 
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    30   0.27 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   4.5  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   7.8  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 452 PHFLRSLPGLTPIHLRHLENFPPDTDLP----TFTQNIHRLIN 568
           PHF   L  +  IH  HLE    D + P    TF   +HR++N
Sbjct: 512 PHFFAVLDHVFSIHQTHLELHGKDRNTPPMAKTFVTYLHRILN 554


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 116 RWR-YFFPHKCEGEESARRTD 175
           RW+ +FFPHK E E S+  TD
Sbjct: 374 RWKEHFFPHKAEEENSSSETD 394


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 380 RDEVTAAVHAMAAVDFTVFRVGFLPHFLRSLPGLTPIHLR 499
           R E +   H  AA+  T   +GFLP+F   L    P+  R
Sbjct: 154 RVEPSDGSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTR 193


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 283 FTLVIERVEGFNVESQQFDIWLQERAAESG 194
           F+  + + +G+NVE      WL E +A SG
Sbjct: 46  FSAYLLKSQGYNVEGVFMRNWLDEDSAPSG 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,503
Number of Sequences: 5004
Number of extensions: 17342
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)