Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E02
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333...    29   2.6  
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963...    27   8.0  

>07_03_1058 +
           23631819-23631943,23632032-23632101,23632196-23633368,
           23633469-23634266
          Length = 721

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 121 PPVNQNAGKESMRGPREIRCVERRARQHVAVQQVEHGAHA 2
           P   Q+AG +S+ G  E+R +E     HV++Q+   GA A
Sbjct: 369 PEPEQDAGGQSIAGSPEVRAMESIVASHVSMQR--RGAEA 406


>05_03_0424 -
           13795721-13795900,13796134-13796202,13796260-13796385,
           13797224-13798166,13798263-13799248
          Length = 767

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 38  VLPRATLDAPDLARAAHRLLASVLIN 115
           +L  A   AP LARAAH LL  + +N
Sbjct: 159 LLAAARYPAPSLARAAHALLGKIGLN 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,525
Number of Sequences: 37544
Number of extensions: 133792
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)