Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E02
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24495| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)                      37   0.013

>SB_24495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = +2

Query: 230 ELLRLNIETLDTLNNKCKLYHKAIFRSEFLCEFXXXXXXXXXXXXWRALARDEVTAAVHA 409
           ++L  N+ +  ++    +   + IFRS  L +F               L +DE+   ++ 
Sbjct: 279 DMLEENMCSSHSVTEDVRQAFEDIFRSNMLLQFVNVLTQALVHRS-HDLLQDEIIITIYN 337

Query: 410 MAAVDFTVFRVGFLPHFLRSLPGLTPIHLRHL-ENFPPDTDLPTF 541
           MAAVD+  F   FL  FL    GLT      L  NF  D  L  F
Sbjct: 338 MAAVDWDQFFASFLLQFLVGCEGLTENQKSELRNNFRQDKVLTCF 382


>SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)
          Length = 406

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = +2

Query: 299 IFRSEFLCEFXXXXXXXXXXXXWRALARDEVTAAVHAMAAVDFTVFRVGFLPHFLRSLPG 478
           IFRS  L +F               L +DE+   ++ MAAVD+  F   FL  FL    G
Sbjct: 331 IFRSNMLLQFVNVLTQALVHRS-HDLLQDEIIITIYNMAAVDWDQFFASFLLQFLVGCEG 389

Query: 479 LTPIHLRHLEN 511
           LT      L N
Sbjct: 390 LTENQKSELRN 400



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 50  ATLDAPDLARAAHRLLASVLINRWRYFF 133
           A   +PD+      LL  +L++ WRYFF
Sbjct: 276 AERQSPDIKTEFFELLHQLLLHNWRYFF 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,047,362
Number of Sequences: 59808
Number of extensions: 147948
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)