Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E02
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 240 DSTLKPSTRSITSVNST 290
           D   K S  SITSVNST
Sbjct: 398 DEDQKCSIESITSVNST 414


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 295 LMVEFTLVIERVEGFNVESQQF--DIWLQERAAES 197
           ++V+F + +  +   NVE   F  D+++++   ES
Sbjct: 11  VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIES 45


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 485 PIHLRHLENFPPDTDLPT 538
           P H + +E+FP    LPT
Sbjct: 141 PFHEKLVESFPRGGSLPT 158



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 254 TLDTLNNKCKLYHK 295
           TL++LNN   +YH+
Sbjct: 413 TLNSLNNHKSIYHR 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,869
Number of Sequences: 438
Number of extensions: 1241
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)